publications.bib

@inproceedings{DBLP:conf/iceis/JezekM11,
  author    = {Petr Jezek and
               Roman Moucek},
  title     = {Transformation of Object-oriented Code into Semantic Web
               using Java Annotations},

  year      = {2011},
  pages     = {207-210},
  crossref  = {DBLP:conf/iceis/2011-4},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/iceis/2011-4,
  booktitle     = {ICEIS 2011 - Proceedings of the 13th International Conference
               on Enterprise Information Systems, Volume 4, Beijing, China,
               8-11 June, 2011},
  title = {ICEIS (4)},
  publisher = {SciTePress},
  year      = {2011},
  isbn      = {978-989-8425-56-0},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{Jezek10,
	title = {EEG/ERP Portal -- Semantic Web Extension: Generating Ontology from Object Oriented Model},
	author = {Petr Jezek and Roman Moucek},
	booktitle = {2010 Second WRI Global Congress on Intelligent Systems},
	pages = {392--395},
	isbn = {978-0-7695-4304-8},
	year = {2010},
	note = {http://www.odysci.com/article/1010112996769053},
	url = {http://doi.ieeecomputersociety.org/10.1109/GCIS.2010.158},
	doi = {10.1109/GCIS.2010.158},
}


@inproceedings{DBLP:conf/biostec/JezekM12,
  author    = {Petr Jezek and
               Roman Moucek},
  title     = {Semantic Web in EEG/ERP Portal - Extending of Data Layer
               using Java Annotations},
  year      = {2012},
  pages     = {350-353},
  crossref  = {DBLP:conf/biostec/2012hi},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/biostec/2012hi,

  booktitle     = {HEALTHINF 2012 - Proceedings of the International Conference
               on Health Informatics, Vilamoura, Algarve, Portugal, 1 -
               4 February, 2012},
  title = {HEALTHINF},
  publisher = {SciTePress},
  year      = {2012},
  isbn      = {978-989-8425-88-1},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{DBLP:conf/biostec/JezekM10,
  author    = {Petr Jezek and
               Roman Moucek},
 title     = {Database of EEG/ERP Experiments},
  year      = {2010},
  pages     = {222-227},
  crossref  = {DBLP:conf/biostec/2010hi},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/biostec/2010hi,
  booktitle     = {HEALTHINF 2010 - Proceedings of the Third International
               Conference on Health Informatics, Valencia, Spain, January
               20-23, 2010},
  title = {HEALTHINF},
  publisher = {INSTICC Press},
  year      = {2010},
  isbn      = {978-989-674-016-0},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}


@inproceedings{DBLP:conf/biostec/MoucekJP11,
  author    = {Roman Moucek and
               Petr Jezek and
               V{\'a}clav Papez},
  title     = {Semantic Web Technologies in EEG/ERP Domain - Software Solution},

  year      = {2011},
  pages     = {618-621},
  crossref  = {DBLP:conf/biostec/2011hi},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/biostec/2011hi,

  booktitle     = {HEALTHINF 2011 - Proceedings of the International Conference
               on Health Informatics, Rome, Italy, 26-29 January, 2011},
  title = {HEALTHINF},
  publisher = {SciTePress},
  year      = {2011},
  isbn      = {978-989-8425-34-8},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{DBLP:conf/ic3k/MoucekJJP11,
  author    = {Roman Moucek and
               Petr Jaros and
               Petr Jezek and
               V{\'a}clav Papez},
  title     = {Software Infrastructure for EEG/ERP Research},
  year      = {2011},
  pages     = {478-481},
  crossref  = {DBLP:conf/ic3k/2011keo}d,
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/ic3k/2011keod,

  booktitle     = {KEOD 2011 - Proceedings of the International Conference
               on Knowledge Engineering and Ontology Development, Paris,
               France, 26-29 October, 2011},
  title = {KEOD},
  publisher = {SciTePress},
  year      = {2011},
  isbn      = {978-989-8425-80-5},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@ARTICLE{Overview-of-neuroinformatics-infrastructure-in-Pilsen,
 AUTHOR={Roman Moucek  and  Petr Jezek},

TITLE={Overview of neuroinformatics infrastructure in Pilsen, CZ},

JOURNAL={Frontiers in Neuroinformatics},


YEAR={2011},

NUMBER={00161},

URL={http://www.frontiersin.org/Journal/Abstract.aspx?s=752&name=neuroinformatics&ART_DOI=10.3389/conf.fninf.2011.08.00161},

DOI={10.3389/conf.fninf.2011.08.00161},

ISSN={1662-5196},

ABSTRACT={This abstract deals with a present neuroinformatics infrastructure at Department of Computer Science and Engineering, Pilsen, the Czech Republic. The research group at our department works within the Czech INCF National Node and focuses on EEG/ERP experiments. It includes storage, management, processing and analysis of EEG/ERP data.? As the result a number of software solutions have been developed.?
The core activity is development of the EEG/ERP portal. The portal was primarily developed as a?custom software solution for storage and management of EEG/ERP experiments. Since then the portal has significantly changed. At present EEG/ERP experiments can be not only stored and managed, but e.g. the following functionalities have been added: management of experimental scenarios, a?content management system and management of user groups, full text search, download history, or a?laboratory booking system. At present, the portal is being registered within Neuroscience Information Framework (NIF).????
The inner structure of the portal (data/metadata structure) is provided as ontology using semantic web languages and technologies. Since the semantic web and its realization is still a matter of extensive research, two different approaches have been investigated and subsequently two independent software solutions have been introduced. The first approach uses the developed software tool that transforms the structure and content of underlying relational database into RDF/OWL. The second approach uses the software tool that adds the missing semantics into Java annotations (at the level of the object oriented code) and the corresponding RDF/OWL output is generated.??????
Currently the experiments with storage of EEG/ERP data/metadata by using XML trees combined together with the relational database structure are performed.? The convertors of widely used EEG/ERP data/metadata formats (edf, vhdr, ascii) have been developed; they are tested on a?set of various datasets.??
The developed library of methods suitable for EEG/ERP signal processing includes, in addition to basic methods, the wavelet transform, matching pursuit algorithm, and the modification of Hilbert-Huang transform. The library is being integrated into the EEG/ERP portal. Since signal processing methods usually have a high computational complexity, their local execution could be necessary.? They can be added as plugins into the JERPA/JUIGLE software.
The JERPA/JUIGLE is a local software application which has been developed to provide a user with EEG/ERP signal visualization and processing. It includes the following features:? signal visualization, epochs and artifacts marking, baseline correction, epochs averaging, integration of signal processing methods and their application to EEG/ERP signal, and export of results. Experiments can be downloaded directly from the EEG/ERP portal.
?Acknowledgements
This work was supported by Ministry of Education, Youth and Sport of the Czech Republic under the grant ME 949 and UWB grant SGS-2010-038 Methods and Applications of Biomedical Informatics.}
}

@inproceedings{DBLP:conf/biostec/JezekM11,
  author    = {Petr Jezek and
               Roman Moucek},
  title     = {Integration of Signal Processing Methods into EEG/ERP System},
  year      = {2011},
  pages     = {563-566},
  crossref  = {DBLP:conf/biostec/2011hix},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/biostec/2011hix,
  booktitle     = {HEALTHINF 2011 - Proceedings of the International Conference
               on Health Informatics, Rome, Italy, 26-29 January, 2011},
  title = {HEALTHINF},
  publisher = {SciTePress},
  year      = {2011},
  isbn      = {978-989-8425-34-8},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{DBLP:conf/bmei/JezekM11,
  author    = {Petr Jezek and
               Roman Moucek},
  title     = {Semantic web in EEG/ERP portal: Ontology development and
               NIF registration},
  year      = {2011},
  pages     = {2058-2062},
  ee        = {http://dx.doi.org/10.1109/BMEI.2011.6098757},
  crossref  = {DBLP:conf/bmei/2011},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/bmei/2011,

  booktitle     = {4th International Conference on Biomedical Engineering and
               Informatics, BMEI 2011, Shanghai, China, October 15-17,
               2011},
  publisher = {IEEE},
  year      = {2011},
  isbn      = {978-1-4244-9351-7},
  ee        = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6093307},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{MoucekJ10,
  title = {System for Storage and Management of EEG/ERP Experiments - Generation of Ontology},
  author = {Roman Moucek and Petr Jezek},
  year = {2010},
  tags = {ontology},
  researchr = {http://researchr.org/publication/MoucekJ10},
  cites = {0},
  citedby = {0},
  pages = {415-420},
  booktitle = {ICEIS 2010 - Proceedings of the 12th International Conference on Enterprise Information Systems, Volume 1, DISI, Funchal, Madeira, Portugal, June 8 - 12, 2010},

  publisher = {SciTePress},
  isbn = {978-989-8425-04-1},
}

@inproceedings{DBLP:conf/biostec/JezekM13,
  author    = {Petr Jezek and
               Roman Moucek},
  title     = {Electroencephalography Data Processor - Framework for Running
               Signal Processing Methods},
  booktitle = {HEALTHINF},
  year      = {2013},
  pages     = {357-361},
  crossref  = {DBLP:conf/biostec/2013hi},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}
@proceedings{DBLP:conf/biostec/2013hi,
  editor    = {Deborah Stacey and
               Jordi Sol{\'e}-Casals and
               Ana L. N. Fred and
               Hugo Gamboa},
  title     = {HEALTHINF 2013 - Proceedings of the International Conference
               on Health Informatics, Barcelona, Spain, 11-14 February,
               2013},
  booktitle = {HEALTHINF},
  publisher = {SciTePress},
  year      = {2013},
  isbn      = {978-989-8565-37-2},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@ARTICLE{EEG-ERP-portal-Extending-object-oriented-code-for-the-missing-semantics-using-Java-annotations,
  AUTHOR={Petr Je\v{z}ek  and  Roman Moucek},
  TITLE={EEG/ERP portal - Extending object oriented code for the missing semantics using Java annotations},
  JOURNAL={Frontiers in Neuroinformatics},
  NUMBER={00117},

  URL={http://www.frontiersin.org/Journal/Abstract.aspx?s=752&name=neuroinformatics&ART_DOI=10.3389/conf.fninf.2011.08.00117},

  DOI={10.3389/conf.fninf.2011.08.00117},

  ISSN={1662-5196},
  year={2011}

}

@ARTICLE{EEG-ERP-experiments-data-and-metadata-structures,
  AUTHOR={Roman Mou\v{c}ek and Petr Je\v{z}ek},
  TITLE={EEG/ERP experiments - data and metadata structures},
  JOURNAL={Frontiers in Neuroinformatics},
  year = {2008},

  DOI={10.3389/conf.neuro.11.2008.01.114},

}

@ARTICLE{Database-for-EEG-ERP-Experiments,
  AUTHOR={Petr Je\v{z}ek and Roman Mou\v{c}ek},
  TITLE={Database for EEG/ERP Experiments},
  JOURNAL={Frontiers in Neuroinformatics},
  year = {2009},

  DOI={2009 doi: 10.3389/conf.neuro.11.2009.08.057},

}

@ARTICLE{System-for-storage-EEG/ERP-data-and-metadata,
  AUTHOR={Petr Je\v{z}ek and Roman Mou\v{c}ek},
  TITLE={System for storage EEG/ERP data and metadata},
  JOURNAL={Frontiers in Neuroinformatics},
  year = {2010}


}

@ARTICLE{Deriving-Semantic-web-structures-from-EEG-ERP-data-source,
  AUTHOR={Roman Mou\v{c}ek and Petr Je\v{z}ek},
  TITLE={Deriving Semantic web structures from EEG/ERP data source},
  JOURNAL={Frontiers in Neuroinformatics},
  year = {2010}
}

@ARTICLE{Semantic-Web-in-EEG-ERP-Portal,
  AUTHOR={Petr Je\v{z}ek and Roman Mou\v{c}ek},
  TITLE={Semantic Web in EEG/ERP Portal},
  JOURNAL={Frontiers in Neuroinformatics},
  year = {2011}
}


@article{ ISI:000306821100004,
Author = {Jezek, Petr and Moucek, Roman},
Title = {{SYSTEM FOR EEG/ERP DATA AND METADATA STORAGE AND MANAGEMENT}},
Journal = {{NEURAL NETWORK WORLD}},
Year = {{2012}},
Volume = {{22}},
Number = {{3}},
Pages = {{277-290}},
Abstract = {{The purpose of this paper is to introduce a system for EEG/ERP
   (electroencephalography, event-related potentials) data and metadata
   storage and processing and to summarize the authors' research in this
   field. Since researchers have difficulties with a suitable long-term
   storage and management of electrophysiology data the presented system
   helps them to increase both efficiency and effectiveness of their work
   by providing the means for the storage, management, search and sharing
   of EEG/ERP data. The requirements specification including the system
   context, system requirements, project scope, basic features, system
   users, and data formats and metadata structures are presented. The
   database structure is proposed; upload, download and interchange of
   EEG/ERP data and metadata using the web interface are described. The
   system architecture, used technologies and the final realization are
   described. Data and metadata search over the system and user accounts
   including system security management are also presented. Additional
   tools and structures as converters of data formats and semantic web
   ontology are mentioned.}},
Publisher = {{ACAD SCIENCES CZECH REPUBLIC, INST COMPUTER SCIENCE}},
Address = {{POD VODARENSKOU VEZI 2, 182 07 PRAGUE 8, 00000, CZECH REPUBLIC}},
Type = {{Article}},
Language = {{English}},
Affiliation = {{Moucek, R (Reprint Author), Univ W Bohemia, Dept Comp Sci \& Engn, Plzen, Czech Republic.
   Jezek, Petr; Moucek, Roman, Univ W Bohemia, Dept Comp Sci \& Engn, Plzen, Czech Republic.}},
ISSN = {{1210-0552}},
Keywords = {{Electroencephalography; event-related potentials; EEG/ERP experiments;
   relational database; web interface; data search; user accounts
   management; system security; data format converters}},
Research-Areas = {{Computer Science}},
Web-of-Science-Categories  = {{Computer Science, Artificial Intelligence}},
Author-Email = {{jezekp@kiv.zcu.cz
   moucek@kiv.zcu.cz}},
Funding-Acknowledgement = {{Ministry of Education, Youth and Sport of the Czech Republic {[}ME 949]}},
Funding-Text = {{The work was supported by the Ministry of Education, Youth and Sport of
   the Czech Republic under the grant ME 949.}},
Number-of-Cited-References = {{7}},
Times-Cited = {{0}},
Journal-ISO = {{Neural Netw. World}},
Doc-Delivery-Number = {{979LI}},
Unique-ID = {{ISI:000306821100004}},
}


@ARTICLE{10.3389/conf.fninf.2013.09.00046,

 AUTHOR={Jezek, Petr  and  Moucek, Roman},

TITLE={EEG/ERP Portal for Android Platform},

JOURNAL={Frontiers in Neuroinformatics},

VOLUME={},

YEAR={2013},

NUMBER={46},

URL={http://www.frontiersin.org/neuroinformatics/10.3389/conf.fninf.2013.09.00046/abstract},

DOI={10.3389/conf.fninf.2013.09.00046},

ISSN={1662-5196},

ABSTRACT={We deal with collecting experimental data from Electroencephalography (EEG) and Event-Related Potentials (ERP). Lack of tools for experimental data/metadata management has been solved by developing the EEG/ERP Portal. The advantage of the EEG/ERP Portal is its availability from every computer connected to the Internet. Such solution is sufficient for collecting the most of experiments performed in the laboratory.  On the other hand, situations when using a computer is not a viable option are frequent. Many experiments are conducted outside the laboratory with a portable measuring device. In this environment a desktop computer with internet connectivity is usually not available. The other use case is a situation when a researcher discusses the experimental results with colleagues at workshops. A mobile device synchronized with the EEG/ERP Portal seems to be a practical solution. <br /> 	 <br />Facing mentioned needs we have developed a system for collecting experimental data/metadata running on mobile devices. The Android was selected as a mobile operation system because it provides a free SDK with a well-documented API. In addition, the Android is very often used in the current devices. <br />  <br />The system contains a set of forms where a user can fill metadata describing an experiment. The set of metadata is equivalent to metadata that the user can fill in the EEG/ERP Portal. The metadata are described by the internal portal ontology. In addition, the user can upload binary data. The communication of both the mobile EEG/ERP Portal and web EEG/ERP Portal is ensured using RESTfull web services. Server-client architecture is used.  A server part is implemented in the EEG/ERP Portal. The server provides access to the database and sends data to the client implemented inside the mobile device. The communication between the server and client is secured using SSL protocol. User credentials are required; the EEG/ERP Portal user account is used to verify the client. <br />  <br />The application is hosted in GitHub repository: https://github.com/NEUROINFORMATICS-GROUP-FAV-KIV-ZCU/eeg-database-for-android. Users are welcome to download and test it. <br />  <br /> <br />}}


@inproceedings{conf/vl/JezekMFWG13,
  added-at = {2013-11-06T00:00:00.000+0100},
  author = {Jezek, Petr and Moucek, Roman and Franc, Yann Le and Wachtler, Thomas and Grewe, Jan},
  biburl = {http://www.bibsonomy.org/bibtex/2e29de009ff3d7e592dd7e1383759457f/dblp},
  booktitle = {VL/HCC},
  crossref = {conf/vl/2013},
  editor = {Kelleher, Caitlin and Burnett, Margaret M. and Sauer, Stefan},
  ee = {http://dx.doi.org/10.1109/VLHCC.2013.6645264},
  interhash = {fc21609cb76ff4f95c7c570399f6b6aa},
  intrahash = {e29de009ff3d7e592dd7e1383759457f},
  keywords = {dblp},
  pages = {193-194},
  publisher = {IEEE},
  timestamp = {2013-11-06T00:00:00.000+0100},
  title = {Framework for automatic generation of graphical layout compatible with multiple platforms.},
  url = {http://dblp.uni-trier.de/db/conf/vl/vlhcc2013.html#JezekMFWG13},
  year = 2013
}
%----
@INPROCEEDINGS{6513021, 
author={P. Ježek and R. Mouček}, 
booktitle={Biomedical Engineering and Informatics (BMEI), 2012 5th International Conference on}, 
title={Ontology development in EEG/ERP Portal}, 
year={2012}, 
pages={1280-1284}, 
keywords={electroencephalography;knowledge representation languages;medical computing;meta data;ontologies (artificial intelligence);portals;semantic Web;EEG portal;ERP portal;OWL;metadata;object-oriented code;ontology development;scientific community;semantic Web languages;EEG/ERP Portal;EEG/ERP experiment;Semantic Framework;Semantic Web;data management;electroencephalography;event-related potentials;neuroinformatics;ontology}, 
doi={10.1109/BMEI.2012.6513021}, 
month={Oct},}

@inproceedings{jezek2013model,
  title={Model of Software and Hardware Infrastructure for Electrophysiology.},
  author={Jezek, Petr and Stebet{\'a}k, Jan and Bruha, Petr and Moucek, Roman and Stacey, D and Sol{\'e}-Casals, J and Fred, ALN and Gamboa, H},
  booktitle={HEALTHINF},
  pages={352--356},
  year={2013}
}

@INPROCEEDINGS{6645264, 
author={P. Ježek and R. Mouček and Y. Le Franc and T. Wachtler and J. Grewe}, 
booktitle={Visual Languages and Human-Centric Computing (VL/HCC), 2013 IEEE Symposium on}, 
title={Framework for automatic generation of graphical layout compatible with multiple platforms}, 
year={2013}, 
pages={193-194}, 
keywords={Internet;meta data;software engineering;user interfaces;Web-based user interface;automatic generation;data management systems;generated Web-based layouts;graphical layout;metadata;mobile devices;model-driven approach;neuroscience experiments;unique database structure;Data models;Java;Layout;Servers;Visual databases;XML}, 
doi={10.1109/VLHCC.2013.6645264}, 
ISSN={1943-6092}, 
month={Sept},}

@ARTICLE{10.3389/fninf.2014.00020,
  
 AUTHOR={Moucek, Roman  and  Bruha, Petr  and  Jezek, Petr  and  Mautner, Pavel  and  Novotny, Jiri  and  Papez, Vaclav  and  Prokop, Tomáš  and  Rondík, Tomáš  and  Štebeták, Jan  and  Vareka, Lukas},   
	 
TITLE={Software and Hardware Infrastructure for Research in Electrophysiology},      
	
JOURNAL={Frontiers in Neuroinformatics},      
	
VOLUME={8},      
	
YEAR={2014},      
	
NUMBER={20},     
	  
URL={http://www.frontiersin.org/neuroinformatics/10.3389/fninf.2014.00020/abstract},       
	
DOI={10.3389/fninf.2014.00020},      
	
ISSN={1662-5196} ,      
	
ABSTRACT={As in other areas of experimental science, operation of electrophysiological laboratory, design and performance of electrophysiological experiments, collection, storage and sharing of experimental data and metadata, analysis and interpretation of these data, and publication of results are time consuming activities. If these activities are well organized and supported by a suitable infrastructure, work efficiency of researchers increases significantly. This article deals with the main concepts, design, and development of software and hardware infrastructure for research in electrophysiology. The described infrastructure has been primarily developed for the needs of neuroinformatics laboratory at the University of West Bohemia, the Czech Republic. However, from the beginning it has been also designed and developed to be open and applicable in laboratories that do similar research. After introducing the laboratory and the whole architectural concept the individual parts of the infrastructure are described. The central element of the software infrastructure is a web-based portal that enables community researchers to store, share, download and search data and metadata from electrophysiological experiments. The data model, domain ontology and usage of semantic web languages and technologies are described. Current data publication policy used in the portal is briefly introduced. The registration of the portal within Neuroscience Information Framework is described. Then the methods used for processing of electrophysiological signals are presented. The specific modifications of these methods introduced by laboratory researches are summarized; the methods are organized into a laboratory workflow. Other parts of the software infrastructure include mobile and offline solutions for data/metadata storing and a hardware stimulator communicating with an EEG amplifier and recording software.}}

@ARTICLE{10.3389/fninf.2015.00003,
  
 AUTHOR={Jezek, Petr  and  Moucek, Roman},   
	 
TITLE={Semantic Framework for Mapping Object-Oriented Model to Semantic Web Languages},      
	
JOURNAL={Frontiers in Neuroinformatics},      
	
VOLUME={9},      
	
YEAR={2015},      
	
NUMBER={3},     
	  
URL={http://www.frontiersin.org/neuroinformatics/10.3389/fninf.2015.00003/abstract},       
	
DOI={10.3389/fninf.2015.00003},      
	
ISSN={1662-5196} ,      
	
ABSTRACT={The article deals with and discusses two main approaches in building semantic structures for electrophysiological metadata. It is the use of conventional data structures, repositories, and programming languages on one hand and the use of formal representations of ontologies, known from knowledge representation, such as description logics or semantic web languages on the other hand. Although knowledge engineering offers languages supporting richer semantic means of expression and technological advanced approaches, conventional data structures and repositories are still popular among developers, administrators and users because of their simplicity, overall intelligibility, and lower demands on technical equipment. The choice of conventional data resources and repositories, however, raises the question of how and where to add semantics that cannot be naturally expressed using them. As one of the possible solutions, this semantics can be added into the structures of the programming language that accesses and processes the underlying data. To support this idea we introduced a software prototype that enables its users to add semantically richer expressions into a Java object-oriented code. This approach does not burden users with additional demands on programming environment since reflective Java annotations were used as an entry for these expressions. Moreover, additional semantics need not to be written by the programmer directly to the code, but it can be collected from non-programmers using a graphic user interface. The mapping that allows the transformation of the semantically enriched Java code into the Semantic Web language OWL was proposed and implemented in a library named the Semantic Framework. This approach was validated by the integration of the Semantic Framework in the EEG/ERP Portal and by the subsequent registration of the EEG/ERP Portal in the Neuroscience Information Framework.}}