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Remove best_n setting to 1, it should be determined by minimap2 (5)
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src/lib.rs

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Original file line numberDiff line numberDiff line change
@@ -341,7 +341,7 @@ impl Aligner<()> {
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let mut aligner = Aligner {
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mapopt: MapOpt {
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seed: 11,
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best_n: 1,
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// best_n: 1,
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..Default::default()
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},
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..Default::default()
@@ -2267,6 +2267,15 @@ mod tests {
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);
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}
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#[test]
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fn mapopt_defaults() {
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let aligner = Aligner::builder().map_ont();
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println!("{:#?}", aligner.mapopt);
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let aligner = Aligner::builder();
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println!("{:#?}", aligner.mapopt);
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}
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#[test]
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fn build_aligner_memory_leak() {
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for _ in 0..100000 {

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