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For the "colocated" repo (created with jj git init --colocated, which should be default starting next release I think) you indeed will find .git in the root of the repo.
For the "non-colocated" repo (the one that you created apparently) jj places it inside .jj hierarcy - you can always find it by running jj git root.
So I would imaging you'll need to call git command like this:
git -C $(jj git root) <git command>

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imp
Oct 1, 2025
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@halloleo
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@joyously
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