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# To create a suppression run something like:
# valgrind --tool=memcheck --track-fds=yes --leak-check=yes --num-callers=50 --suppressions=chaste.supp --gen-suppressions=yes io/build/debug/TestSpiralParametersReaderRunner
#################################################
# Note if memory leaks depend on the context (e.g.
# CHASTE_TEST_OUTPUT it may be advisable for Scons
# to produce suppressions automatically:
# python/BuildTypes.py
# - #_valgrind_flags +=" --gen-suppressions=all"
# + _valgrind_flags +=" --gen-suppressions=all"
#################################################
#
# Suppression a memory checking error caused by Boost's serialization library
#
{
boost-archive-reset-object-address-cond
Memcheck:Cond
fun:_ZN5boost7archive6detail14basic_iarchive20reset_object_addressEPKvS4_
fun:_ZN5boost13serialization3stl17archive_input_seqINS_7archive13text_iarchiveESt6vectorIdSaIdEEEclERS4_RS7_
fun:_ZN5boost13serialization3stl18rebuild_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization3stl15load_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization4loadINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization11free_loaderINS_7archive13text_iarchiveESt6vectorIdSaIdEEE6invokeERS3_RS6_j
fun:_ZN5boost13serialization10split_freeINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZN5boost13serialization9serializeINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZNK5boost7archive6detail11iserializerINS0_13text_iarchiveESt6vectorIdSaIdEEE16load_object_dataERNS1_14basic_iarchiveEPvj
fun:_ZN5boost7archive6detail14basic_iarchive11load_objectEPvRKNS1_17basic_iserializerE
fun:_ZN5boost7archive6detail21load_non_pointer_typeINS0_13text_iarchiveESt6vectorIdSaIdEEE13load_standard6invokeERS3_RS6_
}
{
boost-archive-reset-object-address-cond-v34-ints
Memcheck:Cond
fun:_ZN5boost7archive6detail14basic_iarchive20reset_object_addressEPKvS4_
fun:_ZN5boost13serialization3stl17archive_input_seqINS_7archive13text_iarchiveESt6vectorIiSaIiEEEclERS4_RS7_j
fun:_ZN5boost13serialization3stl15load_collectionINS_7archive13text_iarchiveESt6vectorIiSaIiEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization4loadINS_7archive13text_iarchiveEiSaIiEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization11free_loaderINS_7archive13text_iarchiveESt6vectorIiSaIiEEE6invokeERS3_RS6_j
fun:_ZN5boost13serialization10split_freeINS_7archive13text_iarchiveESt6vectorIiSaIiEEEEvRT_RT0_j
fun:_ZN5boost13serialization9serializeINS_7archive13text_iarchiveEiSaIiEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_iarchiveESt6vectorIiSaIiEEEEvRT_RT0_j
fun:_ZNK5boost7archive6detail11iserializerINS0_13text_iarchiveESt6vectorIiSaIiEEE16load_object_dataERNS1_14basic_iarchiveEPvj
fun:_ZN5boost7archive6detail14basic_iarchive11load_objectEPvRKNS1_17basic_iserializerE
fun:_ZN5boost7archive6detail21load_non_pointer_typeINS0_13text_iarchiveESt6vectorIiSaIiEEE13load_standard6invokeERS3_RS6_
}
{
boost-archive-reset-object-address-cond-v34-doubles
Memcheck:Cond
fun:_ZN5boost7archive6detail14basic_iarchive20reset_object_addressEPKvS4_
fun:_ZN5boost13serialization3stl17archive_input_seqINS_7archive13text_iarchiveESt6vectorIdSaIdEEEclERS4_RS7_j
fun:_ZN5boost13serialization3stl15load_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization4loadINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization11free_loaderINS_7archive13text_iarchiveESt6vectorIdSaIdEEE6invokeERS3_RS6_j
fun:_ZN5boost13serialization10split_freeINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZN5boost13serialization9serializeINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZNK5boost7archive6detail11iserializerINS0_13text_iarchiveESt6vectorIdSaIdEEE16load_object_dataERNS1_14basic_iarchiveEPvj
fun:_ZN5boost7archive6detail14basic_iarchive11load_objectEPvRKNS1_17basic_iserializerE
fun:_ZN5boost7archive6detail21load_non_pointer_typeINS0_13text_iarchiveESt6vectorIdSaIdEEE13load_standard6invokeERS3_RS6_
}
{
boost-archive-reset-object-address-value
Memcheck:Value4
fun:_ZN5boost7archive6detail14basic_iarchive20reset_object_addressEPKvS4_
fun:_ZN5boost13serialization3stl17archive_input_seqINS_7archive13text_iarchiveESt6vectorIdSaIdEEEclERS4_RS7_
fun:_ZN5boost13serialization3stl18rebuild_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization3stl15load_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization4loadINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization11free_loaderINS_7archive13text_iarchiveESt6vectorIdSaIdEEE6invokeERS3_RS6_j
fun:_ZN5boost13serialization10split_freeINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZN5boost13serialization9serializeINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZNK5boost7archive6detail11iserializerINS0_13text_iarchiveESt6vectorIdSaIdEEE16load_object_dataERNS1_14basic_iarchiveEPvj
fun:_ZN5boost7archive6detail14basic_iarchive11load_objectEPvRKNS1_17basic_iserializerE
fun:_ZN5boost7archive6detail21load_non_pointer_typeINS0_13text_iarchiveESt6vectorIdSaIdEEE13load_standard6invokeERS3_RS6_
}
{
boost-archive-reset-object-address-value-64bit
Memcheck:Value8
fun:_ZN5boost7archive6detail14basic_iarchive20reset_object_addressEPKvS4_
fun:_ZN5boost13serialization3stl17archive_input_seqINS_7archive13text_iarchiveESt6vectorIdSaIdEEEclERS4_RS7_j
fun:_ZN5boost13serialization3stl15load_collectionINS_7archive13text_iarchiveESt6vectorIdSaIdEENS1_17archive_input_seqIS4_S7_EENS1_11reserve_impIS7_EEEEvRT_RT0_
fun:_ZN5boost13serialization4loadINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization11free_loaderINS_7archive13text_iarchiveESt6vectorIdSaIdEEE6invokeERS3_RS6_j
fun:_ZN5boost13serialization10split_freeINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZN5boost13serialization9serializeINS_7archive13text_iarchiveEdSaIdEEEvRT_RSt6vectorIT0_T1_Ej
fun:_ZN5boost13serialization13serialize_adlINS_7archive13text_iarchiveESt6vectorIdSaIdEEEEvRT_RT0_j
fun:_ZNK5boost7archive6detail11iserializerINS0_13text_iarchiveESt6vectorIdSaIdEEE16load_object_dataERNS1_14basic_iarchiveEPvj
fun:_ZN5boost7archive6detail14basic_iarchive11load_objectEPvRKNS1_17basic_iserializerE
fun:_ZN5boost7archive6detail21load_non_pointer_typeINS0_13text_iarchiveESt6vectorIdSaIdEEE13load_standard6invokeERS3_RS6_
}
#
# Xerces memory error
#
{
xerces-reader
Memcheck:Cond
fun:_ZN11xercesc_2_717XMLUTF8Transcoder13transcodeFromEPKhjPtjRjPh
fun:_ZN11xercesc_2_79XMLReader14xcodeMoreCharsEPtPhj
fun:_ZN11xercesc_2_79XMLReader17refreshCharBufferEv
}
#
# getpwuid on Debian-based systems
#
{
get-user-name
Memcheck:Leak
fun:malloc
obj:/lib/libc-2.6.1.so
fun:__nss_database_lookup
obj:*
obj:*
fun:getpwuid_r
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
#
# getpwuid on Debian-based systems
#
{
get-user-name-2
Memcheck:Addr8
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/ld-2.6.1.so
obj:/lib/libc-2.6.1.so
obj:/lib/ld-2.6.1.so
fun:__libc_dlopen_mode
fun:__nss_lookup_function
obj:/lib/libc-2.6.1.so
fun:getpwuid_r
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
#Another getpwuid related suppression
{
get-user-name-3
Memcheck:Leak
fun:malloc
obj:/lib/tls/i686/cmov/libc-2.8.90.so
fun:__nss_database_lookup
obj:*
obj:*
fun:getpwuid_r
fun:getpwuid
fun:_Z16PetscGetUserNamePcj
fun:_ZN7CxxTest20RealWorldDescription5setUpEv
fun:_ZN7CxxTest10TestRunner8runWorldEv
fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
fun:_ZN7CxxTest14ErrorFormatter3runEv
fun:main
}
{
get-user-name-4
Memcheck:Leak
fun:malloc
fun:nss_parse_service_list
fun:__nss_database_lookup
obj:*
obj:*
fun:getpwuid_r@@GLIBC_2.2.5
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
{
get-user-name-5
Memcheck:Leak
fun:malloc
fun:nss_parse_service_list
fun:__nss_database_lookup
obj:*
fun:getpwuid_r@@GLIBC_2.2.5
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
# Ubuntu 8.04.2
{
get-user-name-5
Memcheck:Leak
fun:malloc
obj:/lib/libc-2.7.so
fun:__nss_database_lookup
obj:*
obj:*
fun:getpwuid_r
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
{
get-user-name-6
Memcheck:Addr8
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/ld-2.7.so
obj:/lib/libc-2.7.so
obj:/lib/ld-2.7.so
fun:__libc_dlopen_mode
fun:__nss_lookup_function
obj:/lib/libc-2.7.so
fun:getpwuid_r
fun:getpwuid
fun:_Z16PetscGetUserNamePcm
fun:_Z26PetscErrorPrintfInitializev
fun:_Z15PetscInitializePiPPPcPKcS4_
}
# Matches that try to be future-proof
{
get-host-by-name-generic
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libc-*.so
obj:/lib/ld-*.so
fun:__libc_dlopen_mode
fun:__nss_lookup_function
fun:__nss_next
fun:gethostbyname_r
fun:gethostbyname
}
{
get-user-name-leak-generic
Memcheck:Leak
fun:malloc
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/libc-*.so
fun:__nss_database_lookup
# can use "..." with later valgrinds (e.g. 3.5)
obj:*
obj:*
fun:getpwuid_r*
fun:getpwuid
fun:_Z16PetscGetUserNamePc?
}
{
get-user-name-addr-generic
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libc-*.so
obj:/lib/ld-*.so
fun:__libc_dlopen_mode
fun:__nss_lookup_function
obj:/lib/libc-*.so
fun:getpwuid_r*
fun:getpwuid
fun:_Z16PetscGetUserNamePc?
}
# dlopen
{
dlopen-addr7
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlopen
}
{
dlopen-addr6
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlopen
}
{
dlopen-addr5
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlopen
}
{
dlopen-addr4
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlopen
}
{
dlopen-addr2
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlopen
}
{
dlsym-addr
Memcheck:Addr8
obj:/lib/ld-*.so
# can use "..." with later valgrinds (e.g. 3.5)
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/ld-*.so
obj:/lib/libc-*.so
obj:/lib/libdl-*.so
obj:/lib/ld-*.so
obj:/lib/libdl-*.so
fun:dlsym
}
#
# HDF5 free lists (see http://hdf.ncsa.uiuc.edu/HDF5/faq/valgrind.html )
#
{
HDF5-free-lists-variant1
Memcheck:Param
write(buf)
fun:__write_nocancel
fun:ADIOI_GEN_WriteContig
fun:MPIOI_File_write
fun:PMPI_File_write_at
fun:H5FD_mpio_write
fun:H5FD_write
fun:H5F_write_superblock
fun:H5F_flush
fun:H5F_try_close
fun:H5F_close
fun:H5I_dec_ref
fun:H5Fclose
}
{
HDF5-free-lists-variant2
Memcheck:Param
write(buf)
fun:__write_nocancel
fun:ADIOI_GEN_WriteContig
fun:MPIOI_File_write
fun:PMPI_File_write_at
fun:H5FD_mpio_write
fun:H5FD_write
fun:H5F_block_write
fun:H5B_flush
fun:H5C_flush_single_entry
fun:H5C_flush_cache
fun:H5AC_flush
fun:H5F_flush
fun:H5F_try_close
fun:H5F_close
fun:H5I_dec_ref
fun:H5Fclose
}
{
MPICH problem in calls from H5FD_mpio_open
Memcheck:Leak
fun:malloc
fun:ADIOI_Malloc_fn
fun:ADIO_Open
fun:PMPI_File_open
fun:H5FD_mpio_open
fun:H5FD_open
fun:H5F_open
fun:H5Fcreate
fun:_ZN14Hdf5DataWriter13EndDefineModeEv
}
{
MPICH problem in calls from H5FD_mpio_open
Memcheck:Leak
fun:malloc
fun:ADIOI_Malloc_fn
fun:ADIO_Open
fun:PMPI_File_open
fun:H5FD_mpio_open
fun:H5FD_open
fun:H5F_open
fun:H5Fopen
fun:_ZN14Hdf5DataWriterC1ER24DistributedVectorFactoryRKSsS3_bb
}
{
Memory problem in Tetgen with quadratic meshes
Memcheck:Cond
fun:_ZN6tetgen10tetgenmesh13pointtraverseEv
fun:_ZN6tetgen10tetgenmesh8outnodesEPNS_8tetgenioE
fun:_ZN6tetgen14tetrahedralizeEPNS_14tetgenbehaviorEPNS_8tetgenioES3_S3_S3_
fun:_ZN6tetgen14tetrahedralizeEPcPNS_8tetgenioES2_S2_S2_
fun:_ZN13QuadraticMeshILj3EE15ConstructCuboidEjjj
fun:_ZN23AbstractTetrahedralMeshILj3ELj3EE24ConstructRegularSlabMeshEdddd
}
{
Memory problem in Tetgen with quadratic meshes - different entry point
Memcheck:Cond
fun:_ZN6tetgen10tetgenmesh13pointtraverseEv
fun:_ZN6tetgen10tetgenmesh8outnodesEPNS_8tetgenioE
fun:_ZN6tetgen14tetrahedralizeEPNS_14tetgenbehaviorEPNS_8tetgenioES3_S3_S3_
fun:_ZN6tetgen14tetrahedralizeEPcPNS_8tetgenioES2_S2_S2_
fun:_ZN13QuadraticMeshILj3EE29ConstructFromLinearMeshReaderER18AbstractMeshReaderILj3ELj3EE
}