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scGPT-env

This project builds a Docker image for scGPT using mamba and uv to install dependencies, making deployment easier.

  1. Run the build command from the repo root:
    docker build -t scgpt:latest .
  2. The Dockerfile creates a conda environment called scGPT-env, runs uv sync to install packages, and then executes build_tests/test_import.py.

That's it—this is all you need for image construction and verification.