-
Notifications
You must be signed in to change notification settings - Fork 1
Expand file tree
/
Copy pathBES-manuscript-title-page.tex
More file actions
227 lines (208 loc) · 8.32 KB
/
Copy pathBES-manuscript-title-page.tex
File metadata and controls
227 lines (208 loc) · 8.32 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
% Options for packages loaded elsewhere
\PassOptionsToPackage{unicode}{hyperref}
\PassOptionsToPackage{hyphens}{url}
\PassOptionsToPackage{dvipsnames,svgnames,x11names}{xcolor}
%
\documentclass[
letterpaper,
DIV=11,
numbers=noendperiod]{scrartcl}
\usepackage{amsmath,amssymb}
\usepackage{iftex}
\ifPDFTeX
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage{textcomp} % provide euro and other symbols
\else % if luatex or xetex
\usepackage{unicode-math}
\defaultfontfeatures{Scale=MatchLowercase}
\defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
\fi
\usepackage{lmodern}
\ifPDFTeX\else
% xetex/luatex font selection
\fi
% Use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\IfFileExists{microtype.sty}{% use microtype if available
\usepackage[]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
\makeatletter
\@ifundefined{KOMAClassName}{% if non-KOMA class
\IfFileExists{parskip.sty}{%
\usepackage{parskip}
}{% else
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}}
}{% if KOMA class
\KOMAoptions{parskip=half}}
\makeatother
\usepackage{xcolor}
\setlength{\emergencystretch}{3em} % prevent overfull lines
\setcounter{secnumdepth}{5}
% Make \paragraph and \subparagraph free-standing
\ifx\paragraph\undefined\else
\let\oldparagraph\paragraph
\renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
\fi
\ifx\subparagraph\undefined\else
\let\oldsubparagraph\subparagraph
\renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
\fi
\providecommand{\tightlist}{%
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}\usepackage{longtable,booktabs,array}
\usepackage{calc} % for calculating minipage widths
% Correct order of tables after \paragraph or \subparagraph
\usepackage{etoolbox}
\makeatletter
\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
\makeatother
% Allow footnotes in longtable head/foot
\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
\makesavenoteenv{longtable}
\usepackage{graphicx}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
% Set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
\makeatother
\usepackage{lineno,setspace}
\linenumbers
\doublespacing
\KOMAoption{captions}{tableheading}
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\AtBeginDocument{%
\ifdefined\contentsname
\renewcommand*\contentsname{Table of contents}
\else
\newcommand\contentsname{Table of contents}
\fi
\ifdefined\listfigurename
\renewcommand*\listfigurename{List of Figures}
\else
\newcommand\listfigurename{List of Figures}
\fi
\ifdefined\listtablename
\renewcommand*\listtablename{List of Tables}
\else
\newcommand\listtablename{List of Tables}
\fi
\ifdefined\figurename
\renewcommand*\figurename{Figure}
\else
\newcommand\figurename{Figure}
\fi
\ifdefined\tablename
\renewcommand*\tablename{Table}
\else
\newcommand\tablename{Table}
\fi
}
\@ifpackageloaded{float}{}{\usepackage{float}}
\floatstyle{ruled}
\@ifundefined{c@chapter}{\newfloat{codelisting}{h}{lop}}{\newfloat{codelisting}{h}{lop}[chapter]}
\floatname{codelisting}{Listing}
\newcommand*\listoflistings{\listof{codelisting}{List of Listings}}
\makeatother
\makeatletter
\makeatother
\makeatletter
\@ifpackageloaded{caption}{}{\usepackage{caption}}
\@ifpackageloaded{subcaption}{}{\usepackage{subcaption}}
\makeatother
\ifLuaTeX
\usepackage{selnolig} % disable illegal ligatures
\fi
\usepackage{bookmark}
\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
\urlstyle{same} % disable monospaced font for URLs
\hypersetup{
pdftitle={neonSoilFlux: An R Package for Continuous Sensor-Based Estimation of Soil CO2 Fluxes},
pdfauthor={, , , , , , , , , , , and },
colorlinks=true,
linkcolor={blue},
filecolor={Maroon},
citecolor={Blue},
urlcolor={Blue},
pdfcreator={LaTeX via pandoc}}
\title{\texttt{neonSoilFlux}: An R Package for Continuous Sensor-Based
Estimation of Soil CO\textsubscript{2} Fluxes}
\author{John Zobitz\textsuperscript{1} \and Edward
Ayres\textsuperscript{2} \and Zoey Werbin\textsuperscript{3} \and Ridwan
Abdi\textsuperscript{1} \and Natalie
Ashburner-Wright\textsuperscript{5} \and Lillian
Brown\textsuperscript{5} \and Ryan
Frink-Sobierajski\textsuperscript{5} \and Lajntxiag
Lee\textsuperscript{1} \and Dijonë
Mehmeti\textsuperscript{1} \and Christina
Tran\textsuperscript{5} \and Ly Xiong\textsuperscript{1} \and Naupaka
Zimmerman\textsuperscript{4,5}}
\date{}
\begin{document}
\maketitle
\textsuperscript{1} Augsburg University, 2211 Riverside Avenue,
Minneapolis, MN 55454\\
\textsuperscript{2} National Ecological Observatory Network, Battelle,
1685 38th Street, Suite 100, Boulder, CO 80301\\
\textsuperscript{3} Boston University, 5 Cummington Street, Boston, MA
02215\\
\textsuperscript{4} University of Kansas, 1450 Jayhawk Boulevard,
Lawrence, KS 66045\\
\textsuperscript{5} University of San Francisco, 2130 Fulton Street, San
Francisco, CA 94117
\section*{Acknowledgments}\label{acknowledgments}
\addcontentsline{toc}{section}{Acknowledgments}
John Zobitz acknowledges Kathleen O'Rourke for code development. Naupaka
Zimmerman thanks technical staff at USF for support with field gear
assembly and shipping. We thank the NEON field staff and assignable
assets teams for facilitating each of the six NEON site visits. We are
grateful to LI-COR technical staff for helpful discussions about optimal
soil chamber sampling methods. This work was supported by NSF DEB grant
\#2017829 awarded to John Zobitz, and NSF DEB grant \#2017860 awarded to
Naupaka Zimmerman. This material is based in part upon work supported by
the National Ecological Observatory Network (NEON), a program sponsored
by the U.S. National Science Foundation (NSF) and operated under
cooperative agreement by Battelle. We also thank the reviewers and
subject editor for their constructive feedback.
\section*{Conflict of Interest
Statements}\label{conflict-of-interest-statements}
\addcontentsline{toc}{section}{Conflict of Interest Statements}
None of the authors have a financial, personal, or professional conflict
of interest related to this work.
\section*{Author Contributions}\label{author-contributions}
\addcontentsline{toc}{section}{Author Contributions}
Conceptualization: John Zobitz, Naupaka Zimmerman; Methodology: Edward
Ayres, John Zobitz, Naupaka Zimmerman; Software: John Zobitz, Naupaka
Zimmerman, Zoey Werbin, Edward Ayres, Dijonë Mehmeti, Ridwan Abdi, Ly
Xiong, Lajntxiag Lee; Validation: John Zobitz, Naupaka Zimmerman; Formal
Analysis: John Zobitz, Naupaka Zimmerman, Dijonë Mehmeti, Ridwan Abdi,
Ly Xiong, Lajntxiag Lee; Investigation: John Zobitz, Naupaka Zimmerman,
Ryan Frink-Sobierajski, Christina Tran, Natalie Ashburner-Wright,
Lillian Brown; Resources: John Zobitz, Naupaka Zimmerman; Data curation:
John Zobitz, Naupaka Zimmerman, Dijonë Mehmeti, Ly Xiong; Writing --
original draft: John Zobitz, Naupaka Zimmerman; Writing -- review and
editing: John Zobitz, Naupaka Zimmerman, Zoey Werbin, Edward Ayres,
Christina Tran, Dijonë Mehmeti, Ly Xiong; Visualization: John Zobitz,
Naupaka Zimmerman, Dijonë Mehmeti, Ridwan Abdi, Ly Xiong; Supervision:
John Zobitz, Naupaka Zimmerman; Project Administration: John Zobitz,
Naupaka Zimmerman; Funding Acquisition: John Zobitz, Naupaka Zimmerman.
\section*{Data Availability}\label{data-availability}
\addcontentsline{toc}{section}{Data Availability}
Field-collected data, \texttt{neonSoilFlux} calculated outputs, and
manuscript-generating code are archived via Zenodo:
\url{https://doi.org/10.5281/zenodo.17516319} (Zobitz \& Zimmerman,
2025). All analyses in this manuscript were based on the version of
\texttt{neonSoilFlux} tagged v2.9.0 on the package's GitHub repository
\url{https://github.com/jmzobitz/neonSoilFlux}. This version of the
package is also archived at Zenodo under the following DOI:
\url{https://doi.org/10.5281/zenodo.17624494} (Zobitz et al., 2025).
\end{document}