Problem database download

[qhelleu]

Hi jnarayan81,

I installed alienomics with conda (as described in the wiki), and I tried to download the databases, but it doesn't work:

$ alienomics_v0.3.2 -dd -ddf BURT -ddl ./alien_DB/

/\ | | |__ |\ | / \ |/| | / /__
/~~\ |___ | |___ | | _/ | | | _, .__/ v0.3

Automated pipeline for HGT and contaminant detection in an assembled, annotated genome
Contact: jnarayan81@gmail.com and polo.simion@gmail.com for support

lun., 20 mars 2023 13:42:35 Starting database download

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| \ ___ __ __ ___ _ | | ___ __ _ | | ___ _ _
| |) | / _ \ \ V V | ' \ | | / _ \ / | / _ | / -) | '|
|/ _/ _/_/|||| ||_ _/ _,| _,| ___| ||_
|"""""|"""""|"""""|"""""|"""""|"""""|"""""|"""""|"""""|"""""|
"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-"-0-0-' v0.0.1

Automated alienomics dependencies downloader >>>

lun., 20 mars 2023 13:42:35 Checking alienomics mandatory modules
lun., 20 mars 2023 13:42:35 Installing third party databases for Alienomics
output folder: ./alien_DB//third_party_DB/

lun., 20 mars 2023 13:42:35 NCBI taxonomic database
downloading taxdump
No such file or directory at AOM/downloadHandler.pm line 89.

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I think, the link for taxdump has changed since the latest version of alienomics. Can you confirm?
Thanks.

[jnarayan81]

Thank you for reporting this; it appears that there are some dependencies with the configuration file over here. The link appears to be operational. I'll update it in the next release. Please do it manually for the time being :(