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copy 0.5 examples/schemas
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‎examples/bf2raw/image.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"bioformats2raw.layout": 3
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}
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}

‎examples/bf2raw/plate.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"bioformats2raw.layout": 3,
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"plate": {
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"columns": [

‎examples/coordinate_systems/.config.json‎

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‎examples/coordinate_systems/arrayCoordSys.json‎

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‎examples/label_strict/colors_properties.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"image-label": {
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"colors": [
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{

‎examples/multiscales_strict/multiscales_example.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"multiscales": [
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{
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"name": "example",
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"coordinateSystems": [
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{
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"name": "intrinsic",
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"axes": [
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{ "name": "t", "type": "time", "unit": "millisecond" },
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{ "name": "c", "type": "channel" },
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{ "name": "z", "type": "space", "unit": "micrometer" },
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{ "name": "y", "type": "space", "unit": "micrometer" },
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{ "name": "x", "type": "space", "unit": "micrometer" }
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]
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}
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"axes": [
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{ "name": "t", "type": "time", "unit": "millisecond" },
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{ "name": "c", "type": "channel" },
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{ "name": "z", "type": "space", "unit": "micrometer" },
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{ "name": "y", "type": "space", "unit": "micrometer" },
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{ "name": "x", "type": "space", "unit": "micrometer" }
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],
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"datasets": [
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{
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"path": "0",
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"coordinateTransformations": [
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{
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// the voxel size for the first scale level (0.5 micrometer)
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// and the time unit (0.1 milliseconds), which is the same for each scale level
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"type": "scale",
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"scale": [0.1, 1.0, 0.5, 0.5, 0.5],
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"input": "0",
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"output": "intrinsic"
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"scale": [1.0, 1.0, 0.5, 0.5, 0.5]
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}
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]
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},
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"coordinateTransformations": [
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{
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// the voxel size for the second scale level (downscaled by a factor of 2 -> 1 micrometer)
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// and the time unit (0.1 milliseconds), which is the same for each scale level
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"type": "scale",
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"scale": [0.1, 1.0, 1.0, 1.0, 1.0],
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"input": "1",
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"output": "intrinsic"
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"scale": [1.0, 1.0, 1.0, 1.0, 1.0]
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}
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]
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},
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"coordinateTransformations": [
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{
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// the voxel size for the third scale level (downscaled by a factor of 4 -> 2 micrometer)
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// and the time unit (0.1 milliseconds), which is the same for each scale level
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"type": "scale",
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"scale": [0.1, 1.0, 2.0, 2.0, 2.0],
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"input": "2",
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"output": "intrinsic"
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"scale": [1.0, 1.0, 2.0, 2.0, 2.0]
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}
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]
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}
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],
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"coordinateTransformations": [
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{
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// the time unit (0.1 milliseconds), which is the same for each scale level
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"type": "scale",
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"scale": [0.1, 1.0, 1.0, 1.0, 1.0]
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}
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],
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"type": "gaussian",
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"metadata": {
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"description": "the fields in metadata depend on the downscaling implementation. Here, the parameters passed to the skimage function are given",
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]
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}
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}
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}
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}

‎examples/multiscales_strict/multiscales_example_relative.json‎

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‎examples/multiscales_strict/multiscales_transformations.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"multiscales": [
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{
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"coordinateSystems": [
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"axes": [
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{
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"name": "physical",
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"axes": [
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{
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"name": "y",
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"type": "space",
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"unit": "micrometer"
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},
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{
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"name": "x",
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"type": "space",
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"unit": "micrometer"
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}
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]
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"name": "y",
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"type": "space",
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"unit": "micrometer"
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},
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{
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"name": "intrinsic",
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"axes": [
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{
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"name": "y",
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"type": "space",
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"unit": "micrometer"
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},
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{
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"name": "x",
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"type": "space",
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"unit": "micrometer"
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}
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]
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"name": "x",
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"type": "space",
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"unit": "micrometer"
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}
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],
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"datasets": [
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"coordinateTransformations": [
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{
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"scale": [1, 1],
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"type": "scale",
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"input": "0",
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"output": "intrinsic"
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"type": "scale"
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}
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]
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}
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],
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"coordinateTransformations": [
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{
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"scale": [10, 10],
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"type": "scale",
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"input": "intrinsic",
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"output": "physical"
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"type": "scale"
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}
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],
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"name": "image_with_coordinateTransformations",

‎examples/ome/series-2.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"series": ["0", "1"]
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}
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}

‎examples/plate_strict/plate_2wells.json‎

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"node_type": "group",
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"attributes": {
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"ome": {
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"version": "0.6.dev2",
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"version": "0.5",
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"plate": {
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"acquisitions": [
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{

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