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- **DeepLIFT / DeepSHAP / Captum** for feature attribution
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- **TF-MoDISco** for motif discovery
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- MEME, FIMO, and tangermeme for motif scanning and validation
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- **SEA** and **FIMO** (from [The MEME Suite](https://meme-suite.org/meme/)) motif scanning and validation
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These approaches are used to identify candidate **RNA-binding protein motifs** and novel intronic regulatory elements controlling splicing kinetics and exon choice.
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