mizer-rewiring/NEWS at master · juliablanchard/mizer-rewiring · GitHub

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mizer 1.0
-----------

* Fixed bugs in how the start time of a simulation was handled. This leads to
  small corrections, so that the output of this version is slightly different
  from previous versions.
* Introduced a scale-invariant trait-based model, set up with
  set_scaling_model(), see section 12 in the vignette.
* Added a function that adds news species to a scale-invariant background,
  and computes an approximately steady state close to the power law, see
  section 13 in the vignette.
* Created an example shiny app to allow people to use mizer through a web
  browser without having to install mizer. The app explores the effect of more
  selective fishing gear in a case study.
* project() now shows a progress bar while simulation is running.
* Improvements to plots:
-- Added units to axes
-- Added method for plotting growth curves
-- PlotYield no longer fails when species names are numbers or when a
     species abundance is zero
-- Added a "total" parameter to several plot methods to add the curve for the
     total community (sum over all species and plankton)
-- Added a "species" parameter to all plot methods to allow for only a
      selection of species to be plotted
-- Allow the number of ticks on y-axis in biomass plot to be controlled
* Allow for size- and species-dependent background death.
* Add initial_n and initial_n_pp slots to mizer params.
* Now checking that effort times are increasing.
* Corrections in the documentation.
* Improvements to the vignette.
* Fix potential problems with negative numbers due to numerical errors.
* Fix a bug in the divisibility checks.
* Add a test of the numeric solution against an analytic solution.


mizer 0.4
-----------

* Improvements made to the speed by evaluating convolution sums via fft,
  removing the bottlenecks in getPhiPrey() and getPredRate().
* Using C++ for the inner loop in the project method for extra speed.
* Minor corrections to vignette and documentation to bring them into alignment
  and to document the new home on github and new maintainers.


mizer 0.3
-----------

* Improvements made to the speed of the simulations. Remaining bottle necks are the sweep statements in getPhiPrey() and getPredRate().
* Moved tests to new suggested folder.
* Minor changes to documentation to pass new check requirements.

mizer 0.2
-----------

* Release to coincide with the submission of the MEE paper. No major changes. Just minor bug fixes.


mizer 0.1
-----------

* Beta release - just about works but still some gremlins to sort out.
  There are a number of features I'd like to add in the coming relases.