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Description
a repost from jupyterlab#16680
Description
When using jump to definition feature, while code was installed in the environment other than base, message No jump targets found is displayed. Autocompletion works fine.
When the same code is installed in base environment, jump to definition works fine.
Reproduce
- Have a project folder with
srcfolder and modules in it andpyproject.tomlto provide build instructions and dependencies - Install this project using
pip install --editable . - Install
nb_conda_kernelsextension - Create new environment with conda, call it
new_env - Create new notebook, import your module from
src - Select
new_envkernel for the notebook - Call function from your module, test autocompletion (should work fine)
- Attempt to jump to funciton definition, observe
No jump targets found
Expected behavior
Module python file should be opened with the function definition to jump to.
This works only if the module was installed in base environment. At the same time autocomplete works fine.
Context
- Operating System and version: Ubuntu 22.04
- Browser and version: Chrome / latest (127.0)
- JupyterLab version: 4.2.4
- Language server and version:
jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge
jupyterlab-lsp 5.1.0 pyhd8ed1ab_2 conda-forge
python-lsp-server 1.11.0 pypi_0 pypi
It’s be easier to reproduce using the container image that I use with my data science team:
https://hub.docker.com/repository/docker/stellars/stellars-jupyterlab-ds/general
It already has 3 environments: base, tensorflow and torch
Required: installed server extensions
Config dir: /home/lab/.jupyterConfig dir: /opt/conda/envs/tensorflow/etc/jupyter
jupyter_lsp enabled
- Validating jupyter_lsp...
jupyter_lsp 2.2.5 OK
jupyter_resource_usage enabled
- Validating jupyter_resource_usage...
jupyter_resource_usage 1.1.0 OK
jupyter_server_mathjax enabled
- Validating jupyter_server_mathjax...
jupyter_server_mathjax OK
jupyter_server_terminals enabled
- Validating jupyter_server_terminals...
jupyter_server_terminals 0.5.3 OK
jupyterlab enabled
- Validating jupyterlab...
jupyterlab 4.2.4 OK
jupyterlab_git enabled
- Validating jupyterlab_git...
jupyterlab_git 0.50.1 OK
nbclassic enabled
- Validating nbclassic...
A_jupyter_server_extension_pointsfunction was not found in nbclassic. Instead, a_jupyter_server_extension_pathsfunction was found and will be used for now. This function name will be deprecated in future releases of Jupyter Server.
nbclassic 1.1.0 OK
nbdime enabled
- Validating nbdime...
nbdime 4.0.1 OK
notebook_shim enabled
- Validating notebook_shim...
notebook_shim OK
Required: installed lab extensions
[W 2024-08-25 12:54:25.219 LabApp] 'kernel_spec_manager_class' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
JupyterLab v4.2.4
/opt/conda/envs/tensorflow/share/jupyter/labextensions
jupyterlab-execute-time v3.1.2 enabled OK (python, jupyterlab_execute_time)
nbdime-jupyterlab v3.0.1 enabled OK
jupyterlab-filesystem-access v0.6.0 enabled OK (python, jupyterlab-filesystem-access)
jupyterlab_pygments v0.3.0 enabled OK (python, jupyterlab_pygments)
@telamonian/theme-darcula v4.0.0 enabled OK (python, theme-darcula)
@jupyterlab/git v0.50.1 enabled OK (python, jupyterlab-git)
@jupyter-server/resource-usage v1.1.0 enabled OK (python, jupyter-resource-usage)
@jupyter-lsp/jupyterlab-lsp v5.1.0 enabled OK (python, jupyterlab-lsp)
@jupyter-widgets/jupyterlab-manager v5.0.13 enabled OK (python, jupyterlab_widgets)
@jlab-enhanced/favorites v3.2.2 enabled OK (python, jupyterlab-favorites)
Disabled extensions:
@jupyterlab/completer-extension:base-service
@jupyterlab/fileeditor-extension:language-server
@jupyterlab/lsp-extension:settings
@jupyterlab/notebook-extension:language-server
Troubleshoot Output
troubleshoot generates too much of an output with package names, nothing important though
Command Line Output
[+] Running 2/2 ✔ Network stellars-jupyterlab-ds_default Created 0.0s ✔ Container lab-gpu Created 0.1s Attaching to lab-gpu lab-gpu | Sun Aug 25 12:59:43 2024 lab-gpu | +-----------------------------------------------------------------------------------------+ lab-gpu | | NVIDIA-SMI 560.31.01 Driver Version: 560.81 CUDA Version: 12.6 | lab-gpu | |-----------------------------------------+------------------------+----------------------+ lab-gpu | | GPU Name Persistence-M | Bus-Id Disp.A | Volatile Uncorr. ECC | lab-gpu | | Fan Temp Perf Pwr:Usage/Cap | Memory-Usage | GPU-Util Compute M. | lab-gpu | | | | MIG M. | lab-gpu | |=========================================+========================+======================| lab-gpu | | 0 NVIDIA GeForce RTX 4090 On | 00000000:0D:00.0 On | Off | lab-gpu | | 30% 31C P8 22W / 450W | 1047MiB / 24564MiB | 1% Default | lab-gpu | | | | N/A | lab-gpu | +-----------------------------------------+------------------------+----------------------+ lab-gpu | lab-gpu | +-----------------------------------------------------------------------------------------+ lab-gpu | | Processes: | lab-gpu | | GPU GI CI PID Type Process name GPU Memory | lab-gpu | | ID ID Usage | lab-gpu | |=========================================================================================| lab-gpu | | 0 N/A N/A 29 G /Xwayland N/A | lab-gpu | | 0 N/A N/A 31 G /Xwayland N/A | lab-gpu | +-----------------------------------------------------------------------------------------+ lab-gpu | lab-gpu | █▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀▀█ lab-gpu | █ Build SONS created on Thu Aug 22 21:51:58 UTC 2024 █ lab-gpu | █ --------------------------------------------------------------------------------------- █ lab-gpu | █ Running JupyterLab server on https://localhost:8888 █ lab-gpu | █ Connect VSCode to Jupyter on https://localhost:8888/lab/tree █ lab-gpu | █ Running Tensorboard server on http://localhost:6006 █ lab-gpu | █ Tensorboard monitoring logs located in /tmp/tf_logs █ lab-gpu | █ Using work dir (projects) /home/lab/workspace (mount) █ lab-gpu | █ Jupyterlab settings saved to /home/lab/.jupyter █ lab-gpu | █ --------------------------------------------------------------------------------------- █ lab-gpu | █ Visit: https://github.com/stellarshenson/stellars-jupyterlab-ds █ lab-gpu | █▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄▄█ lab-gpu | lab-gpu | [I 2024-08-25 12:59:44.256 ServerApp] jupyter_lsp | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.256 ServerApp] jupyter_resource_usage | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.258 ServerApp] jupyter_server_mathjax | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.260 ServerApp] jupyter_server_terminals | extension was successfully linked. lab-gpu | [W 2024-08-25 12:59:44.260 LabApp] 'kernel_spec_manager_class' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. lab-gpu | [W 2024-08-25 12:59:44.261 LabApp] 'kernel_spec_manager_class' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. lab-gpu | [I 2024-08-25 12:59:44.263 ServerApp] jupyterlab | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.263 ServerApp] jupyterlab_git | extension was successfully linked. lab-gpu | [W 2024-08-25 12:59:44.264 NotebookApp] 'kernel_spec_manager_class' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release. lab-gpu | [I 2024-08-25 12:59:44.266 ServerApp] nbclassic | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.266 ServerApp] nbdime | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.548 ServerApp] nb_conda | extension was found and enabled by notebook_shim. Consider moving the extension to Jupyter Server's extension paths. lab-gpu | [I 2024-08-25 12:59:44.548 ServerApp] nb_conda | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.548 ServerApp] notebook_shim | extension was successfully linked. lab-gpu | [I 2024-08-25 12:59:44.810 ServerApp] nb_conda_kernels | enabled, 3 kernels found. lab-gpu | [W 2024-08-25 12:59:44.814 ServerApp] Config option `password` not recognized by `PasswordIdentityProvider`. Did you mean one of: `hashed_password, password_required`? lab-gpu | [I 2024-08-25 12:59:44.824 ServerApp] notebook_shim | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.825 ServerApp] jupyter_lsp | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.825 ServerApp] jupyter_resource_usage | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.826 ServerApp] jupyter_server_mathjax | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.826 ServerApp] jupyter_server_terminals | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.834 LabApp] JupyterLab extension loaded from /opt/conda/lib/python3.11/site-packages/jupyterlab lab-gpu | [I 2024-08-25 12:59:44.834 LabApp] JupyterLab application directory is /opt/conda/share/jupyter/lab lab-gpu | [I 2024-08-25 12:59:44.834 LabApp] Extension Manager is 'pypi'. lab-gpu | [I 2024-08-25 12:59:44.840 ServerApp] jupyterlab | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.843 ServerApp] jupyterlab_git | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.844 ServerApp] [nb_conda] enabled lab-gpu | [I 2024-08-25 12:59:44.844 ServerApp] nb_conda | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.846 ServerApp] nbclassic | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.885 ServerApp] nbdime | extension was successfully loaded. lab-gpu | [I 2024-08-25 12:59:44.885 ServerApp] Serving notebooks from local directory: /home/lab/workspace lab-gpu | [I 2024-08-25 12:59:44.885 ServerApp] Jupyter Server 2.14.2 is running at: lab-gpu | [I 2024-08-25 12:59:44.885 ServerApp] https://localhost:8888/lab?token=... lab-gpu | [I 2024-08-25 12:59:44.886 ServerApp] https://127.0.0.1:8888/lab?token=... lab-gpu | [I 2024-08-25 12:59:44.886 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). lab-gpu | [I 2024-08-25 12:59:44.898 ServerApp] Skipped non-installed server(s): bash-language-server, dockerfile-language-server-nodejs, javascript-typescript-langserver, jedi-language-server, julia-language-server, pyright, python-language-server, r-languageserver, sql-language-server, texlab, typescript-language-server, unified-language-server, vscode-css-languageserver-bin, vscode-html-languageserver-bin, vscode-json-languageserver-bin, yaml-language-server lab-gpu | lab-gpu | NOTE: Using experimental fast data loading logic. To disable, pass lab-gpu | "--load_fast=false" and report issues on GitHub. More details: lab-gpu | https://github.com/tensorflow/tensorboard/issues/4784 lab-gpu | lab-gpu | TensorBoard 2.16.2 at http://lab-gpu:6006/ (Press CTRL+C to quit)
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