Open
Description
Description
Reproduce
- Let the notebook contains only 1 markdown cell, with content

- Run
jupyter nbconvert --to pdf test.ipynb
- It fails to convert the note book to pdf. Log is shown below
[NbConvertApp] Converting notebook test.ipynb to pdf
[NbConvertApp] Writing 19708 bytes to notebook.tex
[NbConvertApp] Building PDF
[NbConvertApp] Running xelatex 3 times: ['xelatex', 'notebook.tex', '-quiet']
[NbConvertApp] CRITICAL | xelatex failed: ['xelatex', 'notebook.tex', '-quiet']
b"This is XeTeX, Version 3.141592653-2.6-0.999996 (TeX Live 2024) (preloaded format=xelatex)\n restricted \\write18 enabled.\nentering extended mode\n(./notebook.tex\nLaTeX2e <2023-11-01> patch level 1\nL3 programming layer <2024-02-20>\n(/usr/local/texlive/2024/texmf-dist/tex/latex/base/article.cls\nDocument Class: article 2023/05/17 v1.4n Standard LaTeX document class\n(/usr/local/texlive/2024/texmf-dist/tex/latex/base/size11.clo))\n(/usr/local/texlive/2024/texmf-dist/tex/latex/tcolorbox/tcolorbox.sty\n(/usr/local/texlive/2024/texmf-dist/tex/latex/pgf/basiclayer/pgf.sty\n(/usr/local/texlive/2024/texmf-dist/tex/latex/pgf/utilities/pgfrcs.sty\n(/usr/local/texlive/2024/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.te\nx)\n(/usr/local/texlive/2024/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def\n) 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entry.\n\n(/usr/local/texlive/2024/texmf-dist/tex/latex/amsfonts/umsa.fd)\n(/usr/local/texlive/2024/texmf-dist/tex/latex/amsfonts/umsb.fd)\n(/usr/local/texlive/2024/texmf-dist/tex/latex/jknapltx/ursfs.fd)\n\nLaTeX Warning: No \\author given.\n\n! Undefined control sequence.\nl.398 \\pandocbounded\n {\\includegraphics[keepaspectratio]{https://wizardzines.c...\n\n? \n! Emergency stop.\nl.398 \n \nNo pages of output.\nTranscript written on notebook.log.\n"
Traceback (most recent call last):
File "/opt/anaconda3/bin/jupyter-nbconvert", line 8, in <module>
sys.exit(main())
^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/jupyter_core/application.py", line 283, in launch_instance
super().launch_instance(argv=argv, **kwargs)
File "/opt/anaconda3/lib/python3.12/site-packages/traitlets/config/application.py", line 1075, in launch_instance
app.start()
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 420, in start
self.convert_notebooks()
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 597, in convert_notebooks
self.convert_single_notebook(notebook_filename)
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 563, in convert_single_notebook
output, resources = self.export_single_notebook(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 487, in export_single_notebook
output, resources = self.exporter.from_filename(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/templateexporter.py", line 386, in from_filename
return super().from_filename(filename, resources, **kw) # type:ignore[return-value]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 201, in from_filename
return self.from_file(f, resources=resources, **kw)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/templateexporter.py", line 392, in from_file
return super().from_file(file_stream, resources, **kw) # type:ignore[return-value]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 220, in from_file
return self.from_notebook_node(
^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/pdf.py", line 197, in from_notebook_node
self.run_latex(tex_file)
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/pdf.py", line 166, in run_latex
return self.run_command(
^^^^^^^^^^^^^^^^^
File "/opt/anaconda3/lib/python3.12/site-packages/nbconvert/exporters/pdf.py", line 156, in run_command
raise raise_on_failure(msg)
nbconvert.exporters.pdf.LatexFailed: PDF creating failed, captured latex output:
Failed to run "['xelatex', 'notebook.tex', '-quiet']" command:
This is XeTeX, Version 3.141592653-2.6-0.999996 (TeX Live 2024) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
(./notebook.tex
LaTeX2e <2023-11-01> patch level 1
L3 programming layer <2024-02-20>
(/usr/local/texlive/2024/texmf-dist/tex/latex/base/article.cls
Document Class: article 2023/05/17 v1.4n Standard LaTeX document class
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(/usr/local/texlive/2024/texmf-dist/tex/generic/pgf/utilities/pgfutil-common.te
x)
(/usr/local/texlive/2024/texmf-dist/tex/generic/pgf/utilities/pgfutil-latex.def
) (/usr/local/texlive/2024/texmf-dist/tex/generic/pgf/utilities/pgfrcs.code.tex
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f
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df.def))))
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code.tex)
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Transcript written on notebook.log.
Context
- Operating System and version: MacOS 15.2
- JupyterLab version:
IPython : 8.25.0
ipykernel : 6.29.5
ipywidgets : 7.8.1
jupyter_client : 8.6.0
jupyter_core : 5.7.2
jupyter_server : 2.14.1
jupyterlab : 4.0.11
nbclient : 0.8.0
nbconvert : 7.16.5
nbformat : 5.9.2
notebook : 7.0.8
qtconsole : 5.5.1
traitlets : 5.14.3
Troubleshoot Output
DEPRECATION: Loading egg at /opt/anaconda3/lib/python3.12/site-packages/mask_rcnn-2.1-py3.12.egg is deprecated. pip 25.1 will enforce this behaviour change. A possible replacement is to use pip for package installation. Discussion can be found at https://github.com/pypa/pip/issues/12330 Error while loading conda entry point: conda-libmamba-solver (module 'libmambapy' has no attribute 'QueryFormat') Error while loading conda entry point: conda-libmamba-solver (module 'libmambapy' has no attribute 'QueryFormat') $PATH: /Users/ericsun/.rbenv/shims /Users/ericsun/.rbenv/bin /Users/ericsun/.elan/bin /opt/homebrew/bin /opt/homebrew/sbin /usr/local/bin /System/Cryptexes/App/usr/bin /usr/bin /bin /usr/sbin /sbin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin /opt/X11/bin /Library/Apple/usr/bin /Library/TeX/texbin /usr/local/share/dotnet ~/.dotnet/tools /Users/ericsun/.rbenv/shims /Users/ericsun/.rbenv/bin /opt/anaconda3/bin /opt/anaconda3/condabin /Users/ericsun/.antigen/bundles/robbyrussell/oh-my-zsh/lib /Users/ericsun/.antigen/bundles/robbyrussell/oh-my-zsh/plugins/git /Users/ericsun/.antigen/bundles/zsh-users/zsh-syntax-highlighting /Users/ericsun/.antigen/bundles/zsh-users/zsh-autosuggestions /Users/ericsun/.antigen/bundles/MichaelAquilina/zsh-you-should-use /Users/ericsun/Library/Application Support/Code/User/globalStorage/github.copilot-chat/debugCommandsys.path:
/opt/anaconda3/bin
/opt/anaconda3/lib/python312.zip
/opt/anaconda3/lib/python3.12
/opt/anaconda3/lib/python3.12/lib-dynload
/opt/anaconda3/lib/python3.12/site-packages
editable.triton-3.2.0+gita2b398e0.finder.path_hook
/opt/anaconda3/lib/python3.12/site-packages/aeosa
/opt/anaconda3/lib/python3.12/site-packages/mask_rcnn-2.1-py3.12.eggsys.executable:
/opt/anaconda3/bin/pythonsys.version:
3.12.2 | packaged by conda-forge | (main, Feb 16 2024, 20:54:21) [Clang 16.0.6 ]platform.platform():
macOS-15.2-arm64-arm-64bitwhich -a jupyter:
/opt/anaconda3/bin/jupyterpip list:
"body is too long (maximum is 65536 characters)." If you need this I can provide.
Command Line Output
[I 2025-01-13 14:16:18.223 ServerApp] Extension package aext_assistant took 0.1388s to import [I 2025-01-13 14:16:18.232 ServerApp] ****************** ENVIRONMENT Environment.PRODUCTION ****************** [I 2025-01-13 14:16:18.233 ServerApp] ****************** ENVIRONMENT Environment.PRODUCTION ****************** [I 2025-01-13 14:16:18.527 ServerApp] Extension package ipyparallel took 0.2919s to import [W 2025-01-13 14:16:18.527 ServerApp] A `_jupyter_server_extension_points` function was not found in ipyparallel. Instead, a `_jupyter_server_extension_paths` function was found and will be used for now. This function name will be deprecated in future releases of Jupyter Server. [W 2025-01-13 14:16:18.532 ServerApp] A `_jupyter_server_extension_points` function was not found in jupyter_lsp. Instead, a `_jupyter_server_extension_paths` function was found and will be used for now. This function name will be deprecated in future releases of Jupyter Server. [W 2025-01-13 14:16:18.535 ServerApp] A `_jupyter_server_extension_points` function was not found in notebook_shim. Instead, a `_jupyter_server_extension_paths` function was found and will be used for now. This function name will be deprecated in future releases of Jupyter Server. [I 2025-01-13 14:16:19.072 ServerApp] Extension package panel.io.jupyter_server_extension took 0.5374s to import [I 2025-01-13 14:16:19.072 ServerApp] aext_assistant | extension was successfully linked. [I 2025-01-13 14:16:19.072 ServerApp] aext_core | extension was successfully linked. [I 2025-01-13 14:16:19.072 ServerApp] aext_panels | extension was successfully linked. [I 2025-01-13 14:16:19.073 ServerApp] aext_share_notebook | extension was successfully linked. [I 2025-01-13 14:16:19.073 ServerApp] ipyparallel | extension was successfully linked. [I 2025-01-13 14:16:19.073 ServerApp] jupyter_lsp | extension was successfully linked. [I 2025-01-13 14:16:19.074 ServerApp] jupyter_server_terminals | extension was successfully linked. [I 2025-01-13 14:16:19.076 ServerApp] jupyterlab | extension was successfully linked. [I 2025-01-13 14:16:19.077 ServerApp] notebook | extension was successfully linked. [I 2025-01-13 14:16:19.080 ServerApp] notebook_shim | extension was successfully linked. [I 2025-01-13 14:16:19.080 ServerApp] panel.io.jupyter_server_extension | extension was successfully linked. [I 2025-01-13 14:16:19.098 ServerApp] notebook_shim | extension was successfully loaded. [I 2025-01-13 14:16:19.099 ServerApp] Registered aext_assistant server extension [I 2025-01-13 14:16:19.099 ServerApp] aext_assistant | extension was successfully loaded. [I 2025-01-13 14:16:19.099 ServerApp] Registered aext_core server extension [I 2025-01-13 14:16:19.099 ServerApp] aext_core | extension was successfully loaded. [I 2025-01-13 14:16:19.099 ServerApp] Registered aext_panels server extension [I 2025-01-13 14:16:19.100 ServerApp] aext_panels | extension was successfully loaded. [I 2025-01-13 14:16:19.100 ServerApp] Registered aext_share_notebook_server server extension [I 2025-01-13 14:16:19.100 ServerApp] aext_share_notebook | extension was successfully loaded. [I 2025-01-13 14:16:19.100 ServerApp] Loading IPython parallel extension [I 2025-01-13 14:16:19.101 ServerApp] ipyparallel | extension was successfully loaded. [I 2025-01-13 14:16:19.101 ServerApp] jupyter_lsp | extension was successfully loaded. [I 2025-01-13 14:16:19.102 ServerApp] jupyter_server_terminals | extension was successfully loaded. [I 2025-01-13 14:16:19.104 LabApp] JupyterLab extension loaded from /opt/anaconda3/lib/python3.12/site-packages/jupyterlab [I 2025-01-13 14:16:19.104 LabApp] JupyterLab application directory is /opt/anaconda3/share/jupyter/lab [I 2025-01-13 14:16:19.104 LabApp] Extension Manager is 'pypi'. [I 2025-01-13 14:16:19.105 ServerApp] jupyterlab | extension was successfully loaded. [I 2025-01-13 14:16:19.106 ServerApp] notebook | extension was successfully loaded. [I 2025-01-13 14:16:19.107 ServerApp] panel.io.jupyter_server_extension | extension was successfully loaded. [I 2025-01-13 14:16:19.107 ServerApp] The port 8888 is already in use, trying another port. [I 2025-01-13 14:16:19.108 ServerApp] Serving notebooks from local directory: /Users/ericsun [I 2025-01-13 14:16:19.108 ServerApp] Jupyter Server 2.14.1 is running at: [I 2025-01-13 14:16:19.108 ServerApp] http://localhost:8889/lab?token=9f01393ec7553d8762ba6eef95d5420034848deb6df49e7e [I 2025-01-13 14:16:19.108 ServerApp] http://127.0.0.1:8889/lab?token=9f01393ec7553d8762ba6eef95d5420034848deb6df49e7e [I 2025-01-13 14:16:19.108 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
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