biovoice/package.json at main · jvogan/biovoice · GitHub

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{
  "name": "biovoice",
  "version": "0.1.0",
  "private": true,
  "type": "module",
  "description": "Voice control for PyMOL and ChimeraX built on the OpenAI Realtime API, and a working reference for Realtime function-tool calling applied to AlphaFold, Rosetta, and cryo-EM workflows.",
  "license": "MIT",
  "author": "Jacob Vogan",
  "homepage": "https://github.com/jvogan/biovoice#readme",
  "repository": {
    "type": "git",
    "url": "git+https://github.com/jvogan/biovoice.git"
  },
  "bugs": {
    "url": "https://github.com/jvogan/biovoice/issues"
  },
  "keywords": [
    "pymol",
    "chimerax",
    "voice-control",
    "voice-interface",
    "voice-agent",
    "voice-agents",
    "molecular-visualization",
    "structural-biology",
    "alphafold",
    "rosetta",
    "cryo-em",
    "openai",
    "openai-realtime",
    "openai-realtime-api",
    "realtime-api",
    "realtime-tool-calling",
    "function-calling",
    "tool-calling",
    "tool-use",
    "llm-tool-calling",
    "structured-outputs",
    "json-schema",
    "openai-agents",
    "agent-examples",
    "agent-tool-use",
    "webrtc",
    "webrtc-voice-agent",
    "ai-agents",
    "ai-agent",
    "llm-agents",
    "bioinformatics",
    "protein-structure",
    "protein-structure-analysis",
    "protein-design",
    "structure-comparison",
    "scientific-visualization",
    "computational-biology",
    "speech-recognition",
    "speech-to-action",
    "natural-language-interface",
    "voice-ai"
  ],
  "engines": {
    "node": ">=20"
  },
  "scripts": {
    "dev": "concurrently -k -n web,server -c magenta,cyan \"npm:dev:web\" \"npm:dev:server\"",
    "dev:web": "vite --config apps/voice-console/vite.config.ts",
    "dev:server": "DEV_SERVER=true tsx watch apps/voice-console/server/index.ts",
    "build": "npm run generate:examples && npm run build:web && npm run build:server",
    "build:web": "vite build --config apps/voice-console/vite.config.ts",
    "build:server": "tsup apps/voice-console/server/index.ts --format esm --out-dir dist/server --clean --sourcemap",
    "start": "node dist/server/index.js",
    "typecheck": "tsc -p tsconfig.json --noEmit",
    "test": "vitest run",
    "check": "npm run build && npm run typecheck && npm run test && npm run release:check",
    "release:check": "node --import tsx scripts/release-readiness.ts",
    "demo:pymol": "DEFAULT_TARGET=pymol npm run dev",
    "demo:chimerax": "DEFAULT_TARGET=chimerax npm run dev",
    "demo:chimera": "npm run demo:chimerax",
    "quickstart:pymol": "tsx scripts/launch-console.ts pymol --clean-target",
    "quickstart:chimera": "tsx scripts/launch-console.ts chimerax --clean-target",
    "quickstart:chimerax": "tsx scripts/launch-console.ts chimerax --clean-target",
    "overlay:pymol": "tsx scripts/launch-console.ts pymol --overlay --clean-target",
    "overlay:chimera": "tsx scripts/launch-console.ts chimerax --overlay --clean-target",
    "overlay:chimerax": "tsx scripts/launch-console.ts chimerax --overlay --clean-target",
    "launch:pymol": "tsx scripts/launch-console.ts pymol",
    "launch:chimera": "tsx scripts/launch-console.ts chimerax",
    "launch:chimerax": "tsx scripts/launch-console.ts chimerax",
    "launch:scientific:pymol": "tsx scripts/launch-console.ts pymol",
    "launch:scientific:chimera": "tsx scripts/launch-console.ts chimerax",
    "launch:scientific:chimerax": "tsx scripts/launch-console.ts chimerax",
    "showcase:pymol:pocket": "tsx scripts/launch-console.ts pymol pymol-binding-pocket-story --audience",
    "showcase:pymol:cryo": "tsx scripts/launch-console.ts pymol pymol-cryo-atomic-handoff --audience",
    "showcase:pymol:overlay": "tsx scripts/launch-console.ts pymol pymol-alphafold-experimental-overlay --audience",
    "showcase:pymol:rosetta": "tsx scripts/launch-console.ts pymol --workflow rosetta_top_design_compare --model examples/data/local/rosetta_demo/reference_scaffold.pdb --bundle examples/data/local/rosetta_demo --scorefile examples/data/local/rosetta_demo/score.sc --top-n 2 --audience",
    "showcase:pymol:grand-tour": "tsx scripts/pymol-grand-tour.ts",
    "showcase:chimerax:pocket": "tsx scripts/launch-console.ts chimerax chimerax-ligand-interaction-explainer --audience",
    "showcase:chimerax:handoff": "tsx scripts/chimerax-hemoglobin-handoff.ts",
    "showcase:chimerax:handoff:console": "tsx scripts/launch-console.ts chimerax chimerax-hemoglobin-structural-handoff --audience",
    "showcase:chimerax:map": "tsx scripts/launch-console.ts chimerax chimerax-em-map-fit-demo --audience",
    "showcase:chimerax:overlay": "tsx scripts/launch-console.ts chimerax chimerax-alphafold-experimental-overlay --audience",
    "showcase:chimerax:rosetta": "tsx scripts/launch-console.ts chimerax --workflow rosetta_interface_packing_review --model examples/data/local/rosetta_demo/reference_scaffold.pdb --bundle examples/data/local/rosetta_demo --scorefile examples/data/local/rosetta_demo/score.sc --top-n 2 --audience",
    "agent:start": "tsx scripts/agent-runtime.ts start",
    "agent:start:pymol": "tsx scripts/agent-runtime.ts start pymol",
    "agent:start:chimera": "tsx scripts/agent-runtime.ts start chimerax",
    "agent:start:chimerax": "tsx scripts/agent-runtime.ts start chimerax",
    "agent:restart": "tsx scripts/agent-runtime.ts restart",
    "agent:restart:pymol": "tsx scripts/agent-runtime.ts restart pymol",
    "agent:restart:chimera": "tsx scripts/agent-runtime.ts restart chimerax",
    "agent:restart:chimerax": "tsx scripts/agent-runtime.ts restart chimerax",
    "agent:status": "tsx scripts/agent-runtime.ts status",
    "agent:stop": "tsx scripts/agent-runtime.ts stop",
    "smoke:pymol": "tsx scripts/smoke-pymol.ts",
    "smoke:chimerax": "tsx scripts/smoke-chimerax.ts",
    "smoke:browser:launch": "tsx scripts/smoke-browser-launch.ts",
    "verify:examples": "tsx scripts/verify-examples.ts",
    "verify:launch": "tsx scripts/verify-launch.ts",
    "verify:showcases": "tsx scripts/verify-showcases.ts",
    "generate:examples": "tsx scripts/generate-example-files.ts",
    "prepare:data": "tsx scripts/fetch-demo-data.ts",
    "cleanup:runtime": "tsx scripts/cleanup-runtime.ts",
    "rehearse:workflow": "tsx scripts/rehearse-workflow.ts",
    "rehearse:pymol": "tsx scripts/rehearse-workflow.ts pymol-binding-pocket-story --target pymol --capture",
    "rehearse:chimerax": "tsx scripts/rehearse-workflow.ts chimerax-ligand-interaction-explainer --target chimerax --capture",
    "usage:report": "tsx scripts/openai-usage-report.ts"
  },
  "dependencies": {
    "dotenv": "^16.6.1",
    "express": "^5.1.0",
    "lucide-react": "^0.546.0",
    "motion": "^12.38.0",
    "react": "^19.2.0",
    "react-dom": "^19.2.0",
    "ws": "^8.18.3",
    "zod": "^4.1.12"
  },
  "devDependencies": {
    "@tailwindcss/vite": "^4.2.2",
    "@testing-library/jest-dom": "^6.9.1",
    "@testing-library/react": "^16.3.2",
    "@types/express": "^5.0.5",
    "@types/node": "^24.10.1",
    "@types/react": "^19.2.2",
    "@types/react-dom": "^19.2.2",
    "@types/ws": "^8.18.1",
    "@vitejs/plugin-react": "^6.0.1",
    "concurrently": "^9.2.1",
    "electron": "^41.1.1",
    "jsdom": "^29.0.1",
    "playwright": "^1.59.1",
    "tailwindcss": "^4.2.2",
    "tsup": "^8.5.1",
    "tsx": "^4.20.6",
    "typescript": "^5.9.3",
    "vite": "^8.0.5",
    "vitest": "^4.1.2"
  }
}