/bin/sh: MosaikBuild: command not found

[minn333]

Dear:
While executing these commad lines, i got error, could you please tell me what the problem is?

java -Xmx8G -jar $mei/MobileInsertions-0.2.4.1.jar
-properties Mobster.properties
-in $input_bam
-sn ${SampleName}
-out $output_mobster

/bin/sh: MosaikBuild: command not found
Exit value: 127
1028601 [main] FATAL Mobster - Mobiome mapping finished with non-normal exit value: 127
1028601 [main] FATAL Mobster - Therefore Mobster execution is terminated

[jess789550]

I got that error too.

ChatGPT helped with the MosaikBuild error:

git clone https://github.com/wanpinglee/MOSAIK.git

cd MOSAIK/src

nano ./CommonSource/Utilities/SafeFunctions.h     # Add #include <ctime>

make

export PATH=$PATH:/path/to/MOSAIK/bin