bids2table/.github/workflows/ci.yaml at 39b814fdfba4affc654955c2222b244c198dabdd · kaitj/bids2table · GitHub

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name: CI

permissions:
  contents: read

on:
  push:
    branches: ["main"]
  pull_request:
    branches: ["main"]

env:
  UV_FROZEN: true
  COVERAGE_PYTHON: "3.12"

jobs:
  format:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v6
        with:
          submodules: "true"
      - uses: astral-sh/setup-uv@v8.1.0
      - run: uv sync --all-extras
      - name: Check quality
        run: |
          uv run ruff check bids2table tests
          uv run ruff format --check bids2table tests

  tests:
    runs-on: ubuntu-latest
    needs: format
    strategy:
      matrix:
        python-version: ["3.11", "3.12", "3.13", "3.14"]
    steps:
      - uses: actions/checkout@v6
        with:
          submodules: "true"
      - uses: astral-sh/setup-uv@v8.1.0
        with:
          python-version: ${{ matrix.python-version }}
      - run: uv sync --all-extras

      - name: Run tests without cloudpathlib
        run: |
          uv run pytest \
            -m "not cloud" \
            --junitxml=pytest-cloudless.xml \
            --cov-report=xml:coverage.xml \
            --cov bids2table \
            tests

      - name: Run tests with cloudpathlib
        run: |
          uv run pytest \
            -m "cloud" \
            --junitxml=pytest-cloud.xml \
            --cov-report=xml:coverage.xml \
            --cov=bids2table \
            --cov-append \
            tests

      - name: Merge JUnit XML reports
        run: |
          uvx junitparser merge \
            pytest-cloudless.xml \
            pytest-cloud.xml \
            pytest.xml

      - name: Record PR number
        if: github.event_name == 'pull_request' && matrix.python-version == env.COVERAGE_PYTHON
        run: echo "${{ github.event.number }}" > pr-number.txt

      - uses: actions/upload-artifact@v7
        if: github.event_name == 'pull_request' && matrix.python-version == env.COVERAGE_PYTHON
        with:
          name: coverage
          retention-days: 1
          path: |
            coverage.xml
            pytest.xml
            pr-number.txt