ci: added pre-commit hooks

Author: kapsner

.Rbuildignore

@@ -14,3 +14,4 @@
 ^CRAN-SUBMISSION$
 ^README\.qmd$
 ^revdep$
+^\.pre-commit-config\.yaml$

.gitignore

@@ -53,3 +53,5 @@ Meta
 !vignettes/*.qmd
 revdep
 /data-raw/debug.R
+
+!.pre-commit-config.yaml

.pre-commit-config.yaml

@@ -0,0 +1,25 @@
+default_install_hook_types:
+  - pre-commit
+  - commit-msg
+  - post-commit
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v6.0.0
+    hooks:
+    - id: check-added-large-files
+    - id: end-of-file-fixer
+    - id: trailing-whitespace
+      args: [ --markdown-linebreak-ext=md ]
+    - id: detect-private-key
+
+  - repo: https://github.com/uker-troi-lab/commit_hooks.git
+    rev: v0.0.1
+    hooks:
+    - id: check-commit-msg
+
+  - repo: https://github.com/kapsner/autonewsmd
+    rev: 6cf561a825945de4c2a87a7a71bd5300a5a6e73c
+    hooks:
+    - id: changelog-helper
+    - id: recreate-changelog

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: mlsurvlrnrs
 Title: R6-Based ML Survival Learners for 'mlexperiments'
-Version: 0.0.6.9003
-Authors@R: 
+Version: 0.0.6.9004
+Authors@R:
     person("Lorenz A.", "Kapsner", , "lorenz.kapsner@gmail.com", role = c("cre", "aut", "cph"),
            comment = c(ORCID = "0000-0003-1866-860X"))
 Description: Enhances 'mlexperiments'
@@ -16,16 +16,16 @@ Description: Enhances 'mlexperiments'
 License: GPL (>= 3)
 URL: https://github.com/kapsner/mlsurvlrnrs
 BugReports: https://github.com/kapsner/mlsurvlrnrs/issues
-Depends: 
+Depends:
     R (>= 4.1.0)
-Imports: 
+Imports:
     data.table,
     kdry,
     mlexperiments (>= 0.0.8),
     mllrnrs,
     R6,
     stats
-Suggests: 
+Suggests:
     glmnet,
     lintr,
     measures,
@@ -36,12 +36,12 @@ Suggests:
     splitTools,
     survival,
     testthat (>= 3.0.1),
-    xgboost (>= 3.1.0.1)
-VignetteBuilder: 
+    xgboost (>= 3.1.1.1)
+VignetteBuilder:
     quarto
 Config/testthat/edition: 3
 Config/testthat/parallel: false
-Date/Publication: 2025-10-16 08:13:10.092883 UTC
+Date/Publication: 2025-11-16 19:36:13.813829 UTC
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 SystemRequirements: Quarto command line tools

NEWS.md

@@ -2,10 +2,12 @@
 
 # mlsurvlrnrs NEWS
 
-## Unreleased (2025-10-15)
+## Unreleased (2025-11-16)
 
 #### Bug fixes
 
+-   added adaptions for package to work with xgboost \> version 3
+    ([875dacc](https://github.com/kapsner/mlsurvlrnrs/tree/875dacc242318436955373ace052aa520df9e05c))
 -   fixed adaptions to new xgboost version
     ([99824a3](https://github.com/kapsner/mlsurvlrnrs/tree/99824a3ef17d0bc7ace3ad5724d99c17a24dd4db))
 -   work on fixing xgboost-aft learner
@@ -16,6 +18,11 @@
 -   added unittest for usecase when learner-args are in param-grid
     ([8027dfc](https://github.com/kapsner/mlsurvlrnrs/tree/8027dfc3440af0fc09be2ffdaa12ae267cb19a92))
 
+#### CI
+
+-   added pre-commit hooks
+    ([e3f632e](https://github.com/kapsner/mlsurvlrnrs/tree/e3f632ebb4cc666992425efb872f7e0fdded7a70))
+
 #### Other changes
 
 -   udated dev-version
@@ -24,7 +31,7 @@
     ([a2ca4aa](https://github.com/kapsner/mlsurvlrnrs/tree/a2ca4aa32fcb7b4bef0df0a1bdf6fbe5601fe909))
 
 Full set of changes:
-[`v0.0.6...8027dfc`](https://github.com/kapsner/mlsurvlrnrs/compare/v0.0.6...8027dfc)
+[`v0.0.6...e3f632e`](https://github.com/kapsner/mlsurvlrnrs/compare/v0.0.6...e3f632e)
 
 ## v0.0.6 (2025-09-09)
 

data-raw/devstuffs.R

@@ -20,7 +20,7 @@ my_desc$set_authors(c(
 # Remove some author fields
 my_desc$del("Maintainer")
 # Set the version
-my_desc$set_version("0.0.6.9003")
+my_desc$set_version("0.0.6.9004")
 # The title of your package
 my_desc$set(Title = "R6-Based ML Survival Learners for 'mlexperiments'")
 # The description of your package
@@ -81,7 +81,7 @@ usethis::use_package("testthat", type = "Suggests", min_version = "3.0.1")
 usethis::use_package("lintr", type = "Suggests")
 usethis::use_package("quarto", type = "Suggests")
 usethis::use_package("glmnet", type = "Suggests")
-usethis::use_package("xgboost", type = "Suggests", min_version = "3.1.0.1")
+usethis::use_package("xgboost", type = "Suggests", min_version = "3.1.1.1")
 usethis::use_package("ranger", type = "Suggests")
 usethis::use_package("rpart", type = "Suggests")
 usethis::use_package("survival", type = "Suggests")
@@ -181,6 +181,7 @@ usethis::use_build_ignore("README.qmd")
 usethis::use_build_ignore("docs")
 usethis::use_build_ignore("Meta")
 usethis::use_build_ignore("revdep")
+usethis::use_build_ignore(".pre-commit-config.yaml")
 
 usethis::use_git_ignore("!NEWS.md")
 usethis::use_git_ignore("!README.md")