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refactor: rename .hpp to .h and move include path to kcenon/pacs/ (#1055)
* refactor: rename .hpp to .h and move include path to kcenon/pacs/ - Move include/pacs/ to include/kcenon/pacs/, renaming all .hpp to .h - Rename remaining .hpp files in examples/, benchmarks/, samples/, tests/, and fuzz/ directories - Update all #include directives from pacs/ to kcenon/pacs/ prefix - Update all .hpp extensions to .h in include paths - Update Doxygen @file references and CMake file listings Total: 299 files renamed, ~2789 include directives updated across 774 source files. Closes #1053 * fix: rename missed query_builder.hpp to .h and fix stale .hpp comment refs The refactor script missed examples/query_scu/query_builder.hpp during the .hpp-to-.h migration, causing a macOS CI build failure with 'query_builder.h' file not found. Also updates stale .hpp references in documentation comments. * chore: update stats script to find .h instead of .hpp and refresh README The calculate-stats.sh script was still searching for *.hpp files after the extension migration, resulting in 0 header files being reported. Updated to search for *.h and regenerated README statistics. * fix: update storage boundary test paths after include path migration The check_storage_boundary.py test was using old paths (include/pacs/*.hpp) instead of the new paths (include/kcenon/pacs/*.h), causing the storage_boundary_guard test to fail on CI.
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‎README.md‎

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|--------|-------|
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| **Header Files** | 282 files |
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| **Source Files** | 204 files |
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| **Header LOC** | ~83,600 lines |
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| **Source LOC** | ~115,000 lines |
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| **Header LOC** | ~76,800 lines |
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| **Source LOC** | ~110,100 lines |
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| **Example LOC** | ~35,600 lines |
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| **Test LOC** | ~85,300 lines |
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| **Total LOC** | ~319,500 lines |
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| **Total LOC** | ~307,800 lines |
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| **Test Files** | 180 files |
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| **Test Cases** | 2584+ tests |
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| **Example Programs** | 32 apps |
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| **Documentation** | 72 markdown files |
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| **CI/CD Workflows** | 13 workflows |
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| **CI/CD Workflows** | 14 workflows |
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| **Version** | 0.1.0 |
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| **Last Updated** | 2026-03-26 |
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| **Last Updated** | 2026-04-03 |
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<!-- STATS_END -->
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‎benchmarks/simd_performance/byte_swap_benchmark.cpp‎

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* @see Issue #313 - Apply SIMD Optimization (Image Processing)
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*/
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#include "simd_benchmark_common.hpp"
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#include "simd_benchmark_common.h"
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#include "pacs/encoding/simd/simd_config.hpp"
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#include "pacs/encoding/simd/simd_utils.hpp"
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#include "kcenon/pacs/encoding/simd/simd_config.h"
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#include "kcenon/pacs/encoding/simd/simd_utils.h"
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#include <catch2/catch_test_macros.hpp>
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#include <catch2/benchmark/catch_benchmark.hpp>

‎benchmarks/simd_performance/photometric_benchmark.cpp‎

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* @see Issue #313 - Apply SIMD Optimization (Image Processing)
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*/
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#include "simd_benchmark_common.hpp"
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#include "pacs/encoding/simd/simd_photometric.hpp"
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#include "simd_benchmark_common.h"
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#include "kcenon/pacs/encoding/simd/simd_photometric.h"
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#include <iostream>
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#include <vector>

‎benchmarks/simd_performance/rle_simd_benchmark.cpp‎

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* @see Issue #313 - Apply SIMD Optimization (Image Processing)
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*/
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#include "simd_benchmark_common.hpp"
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#include "simd_benchmark_common.h"
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#include "pacs/encoding/simd/simd_config.hpp"
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#include "pacs/encoding/simd/simd_rle.hpp"
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#include "kcenon/pacs/encoding/simd/simd_config.h"
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#include "kcenon/pacs/encoding/simd/simd_rle.h"
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#include <catch2/catch_test_macros.hpp>
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#include <catch2/benchmark/catch_benchmark.hpp>

benchmarks/simd_performance/simd_benchmark_common.hpp renamed to benchmarks/simd_performance/simd_benchmark_common.h

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/**
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* @file simd_benchmark_common.hpp
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* @file simd_benchmark_common.h
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* @brief Common utilities for SIMD performance benchmarks
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*
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* Provides data generators, timing utilities, and statistics accumulators
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#ifndef PACS_BENCHMARKS_SIMD_PERFORMANCE_SIMD_BENCHMARK_COMMON_HPP
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#define PACS_BENCHMARKS_SIMD_PERFORMANCE_SIMD_BENCHMARK_COMMON_HPP
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#include "pacs/encoding/simd/simd_config.hpp"
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#include "kcenon/pacs/encoding/simd/simd_config.h"
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#include <algorithm>
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#include <chrono>

‎benchmarks/simd_performance/windowing_benchmark.cpp‎

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* @see Issue #313 - Apply SIMD Optimization (Image Processing)
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*/
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#include "simd_benchmark_common.hpp"
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#include "pacs/encoding/simd/simd_windowing.hpp"
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#include "simd_benchmark_common.h"
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#include "kcenon/pacs/encoding/simd/simd_windowing.h"
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#include <iostream>
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#include <vector>

‎benchmarks/thread_performance/association_benchmark.cpp‎

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* @see Issue #154 - Establish performance baseline benchmarks for thread migration
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*/
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#include "benchmark_common.hpp"
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#include "benchmark_common.h"
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#include <catch2/catch_test_macros.hpp>
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#include <catch2/benchmark/catch_benchmark.hpp>

benchmarks/thread_performance/benchmark_common.hpp renamed to benchmarks/thread_performance/benchmark_common.h

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/**
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* @file benchmark_common.hpp
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* @file benchmark_common.h
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* @brief Common utilities and fixtures for thread performance benchmarks
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*
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* Provides reusable server fixtures, timing utilities, and DICOM data
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#ifndef PACS_BENCHMARKS_THREAD_PERFORMANCE_BENCHMARK_COMMON_HPP
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#define PACS_BENCHMARKS_THREAD_PERFORMANCE_BENCHMARK_COMMON_HPP
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#include "pacs/core/dicom_dataset.hpp"
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#include "pacs/core/dicom_element.hpp"
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#include "pacs/core/dicom_tag_constants.hpp"
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#include "pacs/encoding/vr_type.hpp"
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#include "pacs/network/association.hpp"
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#include "pacs/network/dicom_server.hpp"
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#include "pacs/network/dimse/dimse_message.hpp"
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#include "pacs/network/server_config.hpp"
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#include "pacs/services/storage_scp.hpp"
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#include "pacs/services/storage_scu.hpp"
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#include "pacs/services/verification_scp.hpp"
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#include "kcenon/pacs/core/dicom_dataset.h"
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#include "kcenon/pacs/core/dicom_element.h"
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#include "kcenon/pacs/core/dicom_tag_constants.h"
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#include "kcenon/pacs/encoding/vr_type.h"
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#include "kcenon/pacs/network/association.h"
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#include "kcenon/pacs/network/dicom_server.h"
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#include "kcenon/pacs/network/dimse/dimse_message.h"
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#include "kcenon/pacs/network/server_config.h"
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#include "kcenon/pacs/services/storage_scp.h"
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#include "kcenon/pacs/services/storage_scu.h"
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#include "kcenon/pacs/services/verification_scp.h"
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#include <atomic>
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#include <chrono>

‎benchmarks/thread_performance/concurrent_load_benchmark.cpp‎

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* @see Issue #154 - Establish performance baseline benchmarks for thread migration
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*/
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#include "benchmark_common.hpp"
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#include "benchmark_common.h"
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#include <catch2/catch_test_macros.hpp>
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#include <catch2/benchmark/catch_benchmark.hpp>

‎benchmarks/thread_performance/shutdown_benchmark.cpp‎

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* @see Issue #154 - Establish performance baseline benchmarks for thread migration
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*/
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#include "benchmark_common.hpp"
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#include "benchmark_common.h"
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#include <catch2/catch_test_macros.hpp>
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#include <catch2/benchmark/catch_benchmark.hpp>

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