Installation error #42
Description
Hi to everybody,
I failed several times in installing pyradex. My PC is a Ubuntu 22.04.3 LTS and the software versions are as follows.
~/software/pyradex$ python -c "import sys, astropy, numpy; print(sys.version); print(numpy.__version__,astropy.__version__)" 3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:40:32) [GCC 12.3.0] 1.26.0 5.3.4
~/software/pyradex$ gfortran --version GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
After having installed astroquery and specutils, I cloned pyradex from the repository.
Then I run "python setup.py install_radex install", but the installation is interrupted by this message:
~/software/pyradex$ python setup.py install_radex install
/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/dist.py:314: InformationOnly: Normalizing '0.4.2dev' to '0.4.2.dev0'
self.metadata.version = self._normalize_version(
Downloading RADEX
Download succeeded, or at least didn't obviously fail.
Extracting RADEX source from file /home/tsujita/.astropy/cache/download/url/df9a6b344f9b6851d8c799789754b74e/contents
Reading fortran codes...
Reading file 'slatec.f' (format:fix,strict)
Traceback (most recent call last):
File "/home/tsujita/software/pyradex/setup.py", line 120, in
setup(name='pyradex',
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/home/tsujita/software/pyradex/setup.py", line 44, in run
install_radex.install_radex()
File "/home/tsujita/software/pyradex/install_radex.py", line 25, in install_radex
compile_radex()
File "/home/tsujita/software/pyradex/install_radex.py", line 137, in compile_radex
f2py.run_main(' -h radex.pyf --overwrite-signature'.split()+include_path.split()+files)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/f2py2e.py", line 462, in run_main
postlist = callcrackfortran(files, options)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/f2py2e.py", line 363, in callcrackfortran
postlist = crackfortran.crackfortran(files)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/crackfortran.py", line 3355, in crackfortran
readfortrancode(files, crackline)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/crackfortran.py", line 552, in readfortrancode
dowithline(finalline)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/crackfortran.py", line 858, in crackline
analyzeline(m, pat[1], line)
File "/home/tsujita/miniconda3/envs/pyradex/lib/python3.10/site-packages/numpy/f2py/crackfortran.py", line 1452, in analyzeline
vtype = vars[v].get('typespec')
KeyError: 'iparam(1)'
I can make radex as normal following the official radex homepage, so I suspect that the problem is associated with f2py.
What can I do? Thank you for your help!