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bugSomething isn't workingSomething isn't working
Description
Describe the bug
There seems to be an error when writing zarr arrays with character elements and arbitrary shape. I traced it here by debugging but couldn't really figure out:
Lines 633 to 648 in f84355d
| chunk_setitem = function(chunk_coords, chunk_selection, value, fields = NA) { | |
| # Reference: https://github.com/gzuidhof/zarr.js/blob/15e3a3f00eb19f0133018fb65f002311ea53bb7c/src/core/index.ts#L625 | |
| if (private$order == "C" && self$get_ndim() > 1) { | |
| stop("Setting content for arrays in C-order is not yet supported.") | |
| } | |
| # Obtain key for chunk storage | |
| chunk_key <- private$chunk_key(chunk_coords) | |
| dtype_constr = private$dtype$get_typed_array_ctr() | |
| chunk_size <- compute_size(private$chunks) | |
| if (is_total_slice(chunk_selection, private$chunks)) { | |
| # Totally replace chunk | |
To Reproduce
mat <- array(rep("text", 545*689), dim = c(545, 689))
zarr.array <- pizzarr::zarr_open(store = "data/string_test.zarr", mode = "w")
zarr.array$create_dataset(name = "assay", data = mat, shape = dim(mat), dtype = "<S20")
Error
Error in buf[offset_i_start:offset_i_stop] <- raw_vec_i :
replacement has length zero
Environment:
- Release or git hash: f84355d
- Operating system: macOS Monterey v12.5.1
- R version: 4.3.1
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bugSomething isn't workingSomething isn't working