Description
library(Spectrum)
enrichmentNetwork(enrich@result,
clustMethod = as.character("spectral"),
drawEllipses = T,
fontSize = 2.5,
repelLabels = T
)
Error in as.character(package) :
cannot coerce type 'closure' to vector of type 'character'
Thank you in advance. How to fix this problem？
R version 4.2.3 (2023-03-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Ventura 13.0.1
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] Spectrum_1.1 plotly_4.10.1 forcats_1.0.0
[4] stringr_1.5.0 dplyr_1.1.0 purrr_1.0.1
[7] readr_2.1.3 tidyr_1.3.0 tibble_3.1.8
[10] ggplot2_3.4.2 tidyverse_1.3.2 DOSE_3.24.2
[13] org.Hs.eg.db_3.15.0 AnnotationDbi_1.60.0 IRanges_2.32.0
[16] S4Vectors_0.36.1 Biobase_2.58.0 BiocGenerics_0.44.0
[19] clusterProfiler_4.6.0 aPEAR_1.0
loaded via a namespace (and not attached):
[1] readxl_1.4.1 shadowtext_0.1.2 backports_1.4.1
[4] fastmatch_1.1-3 plyr_1.8.8 igraph_1.3.5
[7] lazyeval_0.2.2 splines_4.2.3 gmp_0.6-10
[10] crosstalk_1.2.0 BiocParallel_1.32.5 SnowballC_0.7.0
[13] MCL_1.0 GenomeInfoDb_1.34.9 digest_0.6.31
[16] foreach_1.5.2 yulab.utils_0.0.6 htmltools_0.5.4
[19] GOSemSim_2.24.0 viridis_0.6.2 GO.db_3.15.0
[22] arules_1.7-6 fansi_1.0.4 magrittr_2.0.3
[25] memoise_2.0.1 googlesheets4_1.0.1 tzdb_0.3.0
[28] Biostrings_2.66.0 graphlayouts_0.8.4 modelr_0.1.10
[31] timechange_0.2.0 enrichplot_1.18.3 colorspace_2.1-0
[34] rvest_1.0.3 blob_1.2.3 ggrepel_0.9.3
[37] haven_2.5.1 xfun_0.37 crayon_1.5.2
[40] RCurl_1.98-1.10 jsonlite_1.8.4 scatterpie_0.1.8
[43] iterators_1.0.14 ape_5.6-2 glue_1.6.2
[46] polyclip_1.10-4 gtable_0.3.1 gargle_1.3.0
[49] zlibbioc_1.44.0 XVector_0.38.0 RcppZiggurat_0.1.6
[52] scales_1.2.1 DBI_1.1.3 Rcpp_1.0.10
[55] viridisLite_0.4.1 gridGraphics_0.5-1 tidytree_0.4.2
[58] bit_4.0.5 htmlwidgets_1.6.1 httr_1.4.4
[61] fgsea_1.24.0 RColorBrewer_1.1-3 ellipsis_0.3.2
[64] ClusterR_1.3.1 pkgconfig_2.0.3 farver_2.1.1
[67] dbplyr_2.3.0 utf8_1.2.3 labeling_0.4.2
[70] ggplotify_0.1.0 tidyselect_1.2.0 rlang_1.1.1
[73] reshape2_1.4.4 munsell_0.5.0 cellranger_1.1.0
[76] tools_4.2.3 cachem_1.0.6 downloader_0.4
[79] cli_3.6.0 generics_0.1.3 RSQLite_2.2.20
[82] gson_0.0.9 bayesbio_1.0.0 broom_1.0.3
[85] evaluate_0.20 fastmap_1.1.0 yaml_2.3.7
[88] ggtree_3.6.2 knitr_1.42 bit64_4.0.5
[91] fs_1.6.0 tidygraph_1.2.3 KEGGREST_1.38.0
[94] ggraph_2.1.0 nlme_3.1-162 aplot_0.1.9
[97] xml2_1.3.3 compiler_4.2.3 rstudioapi_0.14
[100] png_0.1-8 reprex_2.0.2 treeio_1.22.0
[103] tweenr_2.0.2 stringi_1.7.12 lattice_0.20-45
[106] Matrix_1.5-3 vctrs_0.5.2 pillar_1.8.1
[109] lifecycle_1.0.3 data.table_1.14.6 cowplot_1.1.1
[112] bitops_1.0-7 patchwork_1.1.2 qvalue_2.30.0
[115] R6_2.5.1 gridExtra_2.3 lsa_0.73.3
[118] codetools_0.2-19 MASS_7.3-58.2 assertthat_0.2.1
[121] withr_2.5.0 GenomeInfoDbData_1.2.9 diptest_0.76-0
[124] expm_0.999-7 parallel_4.2.3 hms_1.1.2
[127] grid_4.2.3 ggfun_0.0.9 HDO.db_0.99.1
[130] Rfast_2.0.7 rmarkdown_2.20 googledrive_2.0.0
[133] ggforce_0.4.1 lubridate_1.9.1