use const deme definitions

Author: kingaa

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: phylopomp
 Type: Package
 Title: Phylodynamic Inference for POMP Models
-Version: 0.15.1.0
-Date: 2025-12-17
+Version: 0.15.1.1
+Date: 2025-12-27
 Authors@R: c(person(given=c("Aaron","A."),family="King",role=c("aut","cre"),email="kingaa@umich.edu",comment=c(ORCID="0000-0001-6159-3207")),
 	  person(given=c("Qianying"),family="Lin",role=c("aut"),comment=c(ORCID="0000-0001-8620-9910"))
 	  )

R/lbdp.R

@@ -8,9 +8,9 @@
 ##' @include getinfo.R
 ##' @family Genealogy processes
 ##' @param lambda per capita birth rate
-##' @param mu per capita recovery rate.
-##' @param psi per capita sampling rate.
-##' @param n0 initial population size
+##' @param mu per capita death rate
+##' @param psi per capita sampling rate
+##' @param n0 population size at time t0
 ##' @param time final time
 ##' @param t0 initial time
 ##' @return \code{runLBDP} and \code{continueLBDP} return objects of class \sQuote{gpsim} with \sQuote{model} attribute \dQuote{LBDP}.

man/lbdp.Rd

@@ -4,7 +4,7 @@
 #include "generics.h"
 #include "internal.h"
 
-static int deme = 0;
+static const int deme = 0;
 
 //! LBDP process state.
 typedef struct {

src/lbdp.cc

@@ -4,7 +4,7 @@
 #include "generics.h"
 #include "internal.h"
 
-static int deme = 0;
+static const int deme = 0;
 
 //! Moran process state.
 typedef struct {

src/moran.cc

@@ -4,9 +4,9 @@
 #include "generics.h"
 #include "internal.h"
 
-static int host1 = 0;
-static int host2 = 1;
-static int outside = 2;
+static const int host1 = 0;
+static const int host2 = 1;
+static const int outside = 2;
 
 //! S2I2R2 process state.
 typedef struct {

src/s2i2r2.cc

@@ -4,8 +4,8 @@
 #include "generics.h"
 #include "internal.h"
 
-static int Exposed = 0;
-static int Infectious = 1;
+static const int Exposed = 0;
+static const int Infectious = 1;
 
 //! SEIR process state.
 typedef struct {

src/seir.cc

@@ -4,8 +4,8 @@
 #include "generics.h"
 #include "internal.h"
 
-static int ordinary = 0;
-static int superspreader = 1;
+static const int ordinary = 0;
+static const int superspreader = 1;
 
 //! SI2R process state.
 typedef struct {

src/si2r.cc

@@ -4,8 +4,8 @@
 #include "generics.h"
 #include "internal.h"
 
-static int strain1 = 0;
-static int strain2 = 1;
+static const int strain1 = 0;
+static const int strain2 = 1;
 
 //! SIIR process state.
 typedef struct {

src/siir.cc

@@ -4,9 +4,9 @@
 #include "generics.h"
 #include "internal.h"
 
-static int host1 = 0;
-static int host2 = 1;
-static int outside = 2;
+static const int host1 = 0;
+static const int host2 = 1;
+static const int outside = 2;
 
 //! TwoSpecies process state.
 typedef struct {