Dockerized Mycodo

[kizniche]

This is my experiment with using docker and docker-compose to run Mycodo. Thus far I successfully have Mycodo running fully in docker containers. This includes the Flask/Gunicorn frontend, Nginx, Influxdb, and the Mycodo daemon (additionally with Grafana and Telegraf for further data acquisition/presentation). This issue can serve as a discussion thread and a way I can keep users updated on the progress and where this is going. For current information about setup/building, see the docker/README.md.

Current state (check means working):

• All containers start up and communicate (daemon, flask, nginx, influxdb)
• Internal sensors (CPU load, disk space, etc.)
• Device sensors (i.e. /dev/ttyUSB0)
• Telegraf and Grafana
• Outputs
• Upgrade
• Backup/restore

More will be added as they are found

[kizniche]

Below are commands to get it up and running on your system (any linux system, not just a Raspberry Pi).

If you have Mycodo already running from a standard install, first stop the services with these commands:

sudo service mycodo stop
sudo service mycodoflask stop
sudo service nginx stop
sudo service influxdb stop

Checkout the mycodo_docker branch and install prerequisites (docker, docker-compose):

git clone https://github.com/kizniche/Mycodo
cd Mycodo
git checkout mycodo_docker
sudo /bin/bash ./mycodo.sh install-dependencies

Add your user to the docker group so you can run without root privileges (replacing USER with your user):

sudo usermod -aG docker ${USER}

Log out and back in for the changes to take affect, then build:

make build

Once it's built and running, you can navigate to https://127.0.0.1/ to access the web UI.

[Theoi-Meteoroi]

I did this. On the stretch distro for a long run node. This is my CO2 and particle detector station.

pi@CO2mon:~ $ sudo mv ./Mycodo ./645_Mycodo.saved
pi@CO2mon:~ $ sudo apt-get update
...
pi@CO2mon:~ $ sudo rpi-update
 ...

Got this (good to know because I use that on Pi.)

apt-listchanges: News
---------------------

wpasupplicant (2:2.6-19) unstable; urgency=medium

  With this release, wpasupplicant no longer respects the system
  default minimum TLS version, defaulting to TLSv1.0, not TLSv1.2. If
  you're sure you will never connect to EAP networks requiring anything less
  than 1.2, add this to your wpasupplicant configuration:

    tls_disable_tlsv1_0=1
    tls_disable_tlsv1_1=1

  wpasupplicant also defaults to a security level 1, instead of the system
  default 2. Should you need to change that, change this setting in your
  wpasupplicant configuration:

    openssl_ciphers=DEFAULT@SECLEVEL=2

  Unlike wpasupplicant, hostapd still respects system defaults.

 -- Andrej Shadura <andrewsh@debian.org>  Sat, 15 Dec 2018 14:22:18 +0100

15.8 mb on my system.
And reboot once more. Be patient. New baby.

I'm a couple of beers into this so I'll cut and paste what Kyle wrote above. Hold my beer, please.

pi@CO2mon:~ $ git clone https://github.com/kizniche/Mycodo
Cloning into 'Mycodo'...
remote: Enumerating objects: 287, done.
remote: Counting objects: 100% (287/287), done.
remote: Compressing objects: 100% (220/220), done.
remote: Total 38725 (delta 145), reused 137 (delta 67), pack-reused 38438
Receiving objects: 100% (38725/38725), 72.92 MiB | 4.80 MiB/s, done.
Resolving deltas: 100% (31011/31011), done.
pi@CO2mon:~ $ cd Mycodo
pi@CO2mon:~/Mycodo $ git checkout mycodo_docker
Branch mycodo_docker set up to track remote branch mycodo_docker from origin.
Switched to a new branch 'mycodo_docker'
pi@CO2mon:~/Mycodo $ sudo /bin/bash ./mycodo.sh install-dependencies
#### Installing docker
...
#### Installing docker-compose
...
#### Dependencies installed

pi@CO2mon:~/Mycodo $ make build
docker-compose up --build -d
ERROR: Couldn't connect to Docker daemon at http+docker://localhost - is it running?
If it's at a non-standard location, specify the URL with the DOCKER_HOST environment variable.
Makefile:2: recipe for target 'build' failed
make: *** [build] Error 1
pi@CO2mon:~/Mycodo $ sudo docker engine activate
you must be logged in to access licenses.  Please use 'docker login' then try again
pi@CO2mon:~/Mycodo $ make build
docker-compose up --build -d
ERROR: Couldn't connect to Docker daemon at http+docker://localhost - is it running?

If it's at a non-standard location, specify the URL with the DOCKER_HOST environment variable.
Makefile:2: recipe for target 'build' failed
make: *** [build] Error 1

I had added the user Pi to the docker group.
This went on for awhile. Something is wrong with my docker account.
Or this needs docker enterprise. Mkay. I'm game. I sign up on the pi. Big mistake it seems.
Gonna need another beer and new music. That has not resolved the issue.

I have some problem with my Docker account. Going away to fix that.
I'll be back. Probably a good idea to check your docker account, first.
I log in fine in a browser but still getting kicked to the curb in a cli.

-reboot- (because there are times that you gotta)

Beauty.
cd ~/Mycodo
make build

Getting another beer.

pi@CO2mon:~/Mycodo $ make build
docker-compose up --build -d
Creating network "mycodo_default" with the default driver
Creating volume "mycodo_mycodo_var" with default driver
Building influxdb
...
  Running setup.py install for cffi: started
    Running setup.py install for cffi: finished with status 'error'
    Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-_fa39_s9/cffi/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-9unz3ez9/install-record.txt --single-version-externally-managed --compile:
    unable to execute 'gcc': No such file or directory
    unable to execute 'gcc': No such file or directory
    
        No working compiler found, or bogus compiler options passed to
        the compiler from Python's standard "distutils" module.  See
        the error messages above.  Likely, the problem is not related
        to CFFI but generic to the setup.py of any Python package that
        tries to compile C code.  (Hints: on OS/X 10.8, for errors about
        -mno-fused-madd see http://stackoverflow.com/questions/22313407/
        Otherwise, see https://wiki.python.org/moin/CompLangPython or
        the IRC channel #python on irc.freenode.net.)
    
        Trying to continue anyway.  If you are trying to install CFFI from
        a build done in a different context, you can ignore this warning.
    
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-armv7l-3.6
    creating build/lib.linux-armv7l-3.6/cffi
    copying cffi/backend_ctypes.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/vengine_cpy.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/error.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/__init__.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/cffi_opcode.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/vengine_gen.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/ffiplatform.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/model.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/recompiler.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/verifier.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/cparser.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/pkgconfig.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/commontypes.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/api.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/lock.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/setuptools_ext.py -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/_cffi_include.h -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/parse_c_type.h -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/_embedding.h -> build/lib.linux-armv7l-3.6/cffi
    copying cffi/_cffi_errors.h -> build/lib.linux-armv7l-3.6/cffi
    running build_ext
    building '_cffi_backend' extension
    creating build/temp.linux-armv7l-3.6
    creating build/temp.linux-armv7l-3.6/c
    gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/usr/include/ffi -I/usr/include/libffi -I/usr/local/include/python3.6m -c c/_cffi_backend.c -o build/temp.linux-armv7l-3.6/c/_cffi_backend.o
    unable to execute 'gcc': No such file or directory
    error: command 'gcc' failed with exit status 1
    
    ----------------------------------------
Command "/usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-_fa39_s9/cffi/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-9unz3ez9/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-_fa39_s9/cffi/
ERROR: Service 'flask' failed to build: The command '/bin/sh -c pip install --no-cache-dir -r /home/mycodo/requirements.txt' returned a non-zero code: 1
Makefile:2: recipe for target 'build' failed
make: *** [build] Error 1
pi@CO2mon:~/Mycodo $ 

Your move, Kyle. I'll leave this as it is and await better ideas to continue further. Almost is pretty good in my book. I hear that some other embedded applications are going to containers because they are also being built on linux and obscure isn't good enough for security anymore. People around you are already driving those applications. A Tesla isn't just a big battery, with wheels.

[kizniche]

Looks like gcc is needed. I just recently took it out of the install process, but hadn't built on the Pi to verify it was still working. I'll push a fix shortly.

[kizniche]

Sorry your first build experience was a flop. I pushed a fix for the issue building on Pis. I also updated my second comment with more detailed commands to shutdown any previously-installed Mycodo to free up ports and adding the user to the docker group. These should be all the commands possibly needed to get it up and running. I'm currently building on a Pi right now, so if I encounter any issues, I'll push another fix shortly.

[Theoi-Meteoroi]

No worries Kyle, I still had a good time while trying. I'll follow your suggestions and try some more. Its worthwhile to do, I think. Thank you for giving containers a go with Mycodo!

[Theoi-Meteoroi]

Full Moon coming. Guess it is time.

pi@everlast:~ $ sudo apt-get update
Get:1 http://archive.raspberrypi.org/debian stretch InRelease [25.4 kB]
Get:2 http://raspbian.raspberrypi.org/raspbian stretch InRelease [15.0 kB]
Get:3 http://archive.raspberrypi.org/debian stretch/main armhf Packages [214 kB]
Get:4 http://raspbian.raspberrypi.org/raspbian stretch/main armhf Packages [11.7 MB]                                     
Get:5 http://archive.raspberrypi.org/debian stretch/ui armhf Packages [44.5 kB]  
Fetched 12.0 MB in 1min 32s (129 kB/s)                                                                                   
Reading package lists... Done
pi@everlast:~ $ sudo rpi-update
 *** Raspberry Pi firmware updater by Hexxeh, enhanced by AndrewS and Dom
 *** Performing self-update
 *** Relaunching after update
 *** Raspberry Pi firmware updater by Hexxeh, enhanced by AndrewS and Dom
#############################################################
WARNING: This update bumps to rpi-4.19.y linux tree
Be aware there could be compatibility issues with some drivers
Discussion here:
https://www.raspberrypi.org/forums/viewtopic.php?f=29&t=224931
##############################################################
Would you like to proceed? (y/N)

 *** Downloading specific firmware revision (this will take a few minutes)
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   168    0   168    0     0    423      0 --:--:-- --:--:-- --:--:--   424
100 58.4M  100 58.4M    0     0  3960k      0  0:00:15  0:00:15 --:--:-- 3268k
 *** Updating firmware
 *** Updating kernel modules
 *** depmod 4.19.29-v7+
 *** depmod 4.19.29+
 *** Updating VideoCore libraries
 *** Using HardFP libraries
 *** Updating SDK
 *** Running ldconfig
 *** Storing current firmware revision
 *** Deleting downloaded files
 *** Syncing changes to disk
 *** If no errors appeared, your firmware was successfully updated to 3f0ecd1fca450c2cacd429c96b78cc4be96acd51
 *** A reboot is needed to activate the new firmware
pi@everlast:~ $ 
< rebooted >

pi@everlast:~ $ sudo service mycodo stop
Failed to stop mycodo.service: Unit mycodo.service not loaded.
pi@everlast:~ $ sudo service mycodoflask stop
Failed to stop mycodoflask.service: Unit mycodoflask.service not loaded.
pi@everlast:~ $ sudo service nginx stop
pi@everlast:~ $ sudo service influxdb stop
pi@everlast:~ $ git clone https://github.com/kizniche/Mycodo
Cloning into 'Mycodo'...
remote: Enumerating objects: 22, done.
remote: Counting objects: 100% (22/22), done.
remote: Compressing objects: 100% (16/16), done.
remote: Total 38960 (delta 10), reused 13 (delta 6), pack-reused 38938
Receiving objects: 100% (38960/38960), 71.42 MiB | 6.54 MiB/s, done.
Resolving deltas: 100% (31298/31298), done.
pi@everlast:~ $ cd Mycodo
pi@everlast:~/Mycodo $ git checkout mycodo_docker
Branch mycodo_docker set up to track remote branch mycodo_docker from origin.
Switched to a new branch 'mycodo_docker'
pi@everlast:~/Mycodo $ sudo /bin/bash ./mycodo.sh install-dependencies
#### Installing docker
# Executing docker install script, commit: cfba462
+ sh -c apt-get update -qq >/dev/null
+ sh -c apt-get install -y -qq apt-transport-https ca-certificates curl >/dev/null
W: APT had planned for dpkg to do more than it reported back (18 vs 22).
   Affected packages: nginx-full:armhf
+ sh -c curl -fsSL "https://download.docker.com/linux/raspbian/gpg" | apt-key add -qq - >/dev/null
Warning: apt-key output should not be parsed (stdout is not a terminal)
+ sh -c echo "deb [arch=armhf] https://download.docker.com/linux/raspbian stretch stable" > /etc/apt/sources.list.d/docker.list
+ sh -c apt-get update -qq >/dev/null
+ sh -c apt-get install -y -qq --no-install-recommends docker-ce >/dev/null
+ sh -c docker version
Client:
 Version:           18.09.0
 API version:       1.39
 Go version:        go1.10.4
 Git commit:        4d60db4
 Built:             Wed Nov  7 00:57:21 2018
 OS/Arch:           linux/arm
 Experimental:      false

Server: Docker Engine - Community
 Engine:
  Version:          18.09.0
  API version:      1.39 (minimum version 1.12)
  Go version:       go1.10.4
  Git commit:       4d60db4
  Built:            Wed Nov  7 00:17:57 2018
  OS/Arch:          linux/arm
  Experimental:     false
If you would like to use Docker as a non-root user, you should now consider
adding your user to the "docker" group with something like:

  sudo usermod -aG docker your-user

Remember that you will have to log out and back in for this to take effect!

WARNING: Adding a user to the "docker" group will grant the ability to run
         containers which can be used to obtain root privileges on the
         docker host.
         Refer to https://docs.docker.com/engine/security/security/#docker-daemon-attack-surface
         for more information.

** DOCKER ENGINE - ENTERPRISE **

Test drive additional security features by activating Docker Engine - Enterprise.

  * Leverage FIPS 140-2 validated encryption
  * Run only trusted images with digital signature enforcement

** Learn more at https://dockr.ly/engine1 **

ACTIVATE your own engine to Docker Engine - Enterprise using:

  sudo docker engine activate

#### Installing docker-compose
Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
Collecting docker-compose
  Downloading https://files.pythonhosted.org/packages/1e/6c/bf9879305530c4b765ef4eb3be76202788ca1037aec74d2c0ec73191d467/docker_compose-1.23.2-py2.py3-none-any.whl (131kB)
    100% |████████████████████████████████| 133kB 1.7MB/s 
Collecting PyYAML<4,>=3.10 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/9e/a3/1d13970c3f36777c583f136c136f804d70f500168edc1edea6daa7200769/PyYAML-3.13.tar.gz (270kB)
    100% |████████████████████████████████| 276kB 2.9MB/s 
Collecting backports.ssl-match-hostname>=3.5; python_version < "3.5" (from docker-compose)
  Downloading https://www.piwheels.org/simple/backports-ssl-match-hostname/backports.ssl_match_hostname-3.7.0.1-py2.py3-none-any.whl
Collecting websocket-client<1.0,>=0.32.0 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/29/19/44753eab1fdb50770ac69605527e8859468f3c0fd7dc5a76dd9c4dbd7906/websocket_client-0.56.0-py2.py3-none-any.whl (200kB)
    100% |████████████████████████████████| 204kB 2.7MB/s 
Collecting docker<4.0,>=3.6.0 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/fb/d8/8242b8fb3bd3000274fbf5ac1a06cdba8a5ccbcf4e2a8c05f0ab37999fd8/docker-3.7.1-py2.py3-none-any.whl (134kB)
    100% |████████████████████████████████| 143kB 3.4MB/s 
Requirement already satisfied: ipaddress>=1.0.16; python_version < "3.3" in /usr/lib/python2.7/dist-packages (from docker-compose) (1.0.17)
Collecting dockerpty<0.5,>=0.4.1 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/8d/ee/e9ecce4c32204a6738e0a5d5883d3413794d7498fe8b06f44becc028d3ba/dockerpty-0.4.1.tar.gz
Collecting texttable<0.10,>=0.9.0 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/02/e1/2565e6b842de7945af0555167d33acfc8a615584ef7abd30d1eae00a4d80/texttable-0.9.1.tar.gz
Requirement already satisfied: enum34<2,>=1.0.4; python_version < "3.4" in /usr/lib/python2.7/dist-packages (from docker-compose) (1.1.6)
Requirement already satisfied: requests!=2.11.0,!=2.12.2,!=2.18.0,<2.21,>=2.6.1 in /usr/lib/python2.7/dist-packages (from docker-compose) (2.12.4)
Requirement already satisfied: six<2,>=1.3.0 in /usr/lib/python2.7/dist-packages (from docker-compose) (1.10.0)
Collecting jsonschema<3,>=2.5.1 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl
Collecting docopt<0.7,>=0.6.1 (from docker-compose)
  Downloading https://www.piwheels.org/simple/docopt/docopt-0.6.2-py2.py3-none-any.whl
Collecting cached-property<2,>=1.2.0 (from docker-compose)
  Downloading https://files.pythonhosted.org/packages/3b/86/85c1be2e8db9e13ef9a350aecd6dea292bd612fa288c2f40d035bb750ded/cached_property-1.5.1-py2.py3-none-any.whl
Collecting docker-pycreds>=0.4.0 (from docker<4.0,>=3.6.0->docker-compose)
  Downloading https://files.pythonhosted.org/packages/f5/e8/f6bd1eee09314e7e6dee49cbe2c5e22314ccdb38db16c9fc72d2fa80d054/docker_pycreds-0.4.0-py2.py3-none-any.whl
Collecting functools32; python_version == "2.7" (from jsonschema<3,>=2.5.1->docker-compose)
  Downloading https://files.pythonhosted.org/packages/c5/60/6ac26ad05857c601308d8fb9e87fa36d0ebf889423f47c3502ef034365db/functools32-3.2.3-2.tar.gz
docker 3.7.1 has requirement requests!=2.18.0,>=2.14.2, but you'll have requests 2.12.4 which is incompatible.
Installing collected packages: PyYAML, backports.ssl-match-hostname, websocket-client, docker-pycreds, docker, dockerpty, texttable, functools32, jsonschema, docopt, cached-property, docker-compose
  Running setup.py install for PyYAML ... done
  Running setup.py install for dockerpty ... done
  Running setup.py install for texttable ... done
  Running setup.py install for functools32 ... done
Successfully installed PyYAML-3.13 backports.ssl-match-hostname-3.7.0.1 cached-property-1.5.1 docker-3.7.1 docker-compose-1.23.2 docker-pycreds-0.4.0 dockerpty-0.4.1 docopt-0.6.2 functools32-3.2.3.post2 jsonschema-2.6.0 texttable-0.9.1 websocket-client-0.56.0
#### Dependencies installed
pi@everlast:~/Mycodo $ sudo usermod -aG docker pi
pi@everlast:~/Mycodo $ make build
docker-compose up --build -d
ERROR: Couldn't connect to Docker daemon at http+docker://localhost - is it running?

If it's at a non-standard location, specify the URL with the DOCKER_HOST environment variable.
Makefile:2: recipe for target 'build' failed
make: *** [build] Error 1
pi@everlast:~/Mycodo $ ps -ef  | grep docker
root     18781     1  0 00:14 ?        00:00:01 /usr/bin/dockerd -H unix://
pi       19055   859  0 00:18 pts/0    00:00:00 grep --color=auto docker
pi@everlast:~/Mycodo $ sudo make build
docker-compose up --build -d
Creating network "mycodo_default" with the default driver
Creating volume "mycodo_mycodo_var" with default driver
Building influxdb
Step 1/9 : FROM influxdb:latest
latest: Pulling from library/influxdb
ec43a77fdcf3: Pull complete
8a0128678cc4: Pull complete
d5b2e6712f41: Pull complete
93b7da03244c: Pull complete
934e98004036: Pull complete
aaf10ef85fb0: Pull complete
9bc7c4250200: Pull complete
57dad2272f99: Pull complete
Digest: sha256:9d727ada4098eb2729d3891bef1a5e8a67e55da5476d2c2877c5e1f6576ae19f
Status: Downloaded newer image for influxdb:latest
 ---> b4b8eb2bbbe3
Step 2/9 : RUN mkdir -pv /var/influxdb/data
 ---> Running in 03054bdc2705
mkdir: created directory '/var/influxdb'
mkdir: created directory '/var/influxdb/data'
Removing intermediate container 03054bdc2705
 ---> a7cad8c50f77
Step 3/9 : ADD run.sh /run.sh
 ---> 855dd2035d7b
Step 4/9 : RUN chmod +x /*.sh
 ---> Running in 92ae630accbd
Removing intermediate container 92ae630accbd
 ---> bf82f5dee886
Step 5/9 : ENV PRE_CREATE_DB mycodo_db
 ---> Running in c59f83754fc6
Removing intermediate container c59f83754fc6
 ---> c3e41f23f127
Step 6/9 : ENV ADMIN_USER mycodo
 ---> Running in b7e39137d389
Removing intermediate container b7e39137d389
 ---> 117d99e0192e
Step 7/9 : ENV PASS mmdu77sj3nIoiajjs
 ---> Running in 55990e202d84
Removing intermediate container 55990e202d84
 ---> ef81d8d2d3cf
Step 8/9 : EXPOSE 8086
 ---> Running in 97a3d61931b0
Removing intermediate container 97a3d61931b0
 ---> c6321a1c6070
Step 9/9 : CMD /run.sh
 ---> Running in 555ebe537a63
Removing intermediate container 555ebe537a63
 ---> ddda8ff53613

Successfully built ddda8ff53613
Successfully tagged mycodo_influxdb:latest
Building flask
Step 1/10 : FROM python:3.6-slim-stretch
3.6-slim-stretch: Pulling from library/python
ecad9bd7ef0c: Pull complete
91c7faf04446: Pull complete
c4887ffeef28: Pull complete
08f4b324a752: Pull complete
db3c40d03bc5: Pull complete
Digest: sha256:3603dd0f95c7e04974c2eaaf0427470c342ea7284ae45401674fd490c8ce83f4
Status: Downloaded newer image for python:3.6-slim-stretch
 ---> 2da3a01acc0a
Step 2/10 : RUN mkdir -pv /home/mycodo
 ---> Running in ca2fa2bbe95a
mkdir: created directory '/home/mycodo'
Removing intermediate container ca2fa2bbe95a
 ---> ed467cc09495
Step 3/10 : COPY . /home/mycodo
 ---> d541290b5553
Step 4/10 : WORKDIR /home/mycodo/mycodo
 ---> Running in 41e155de3053
Removing intermediate container 41e155de3053
 ---> c52526637701
Step 5/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh create-files-directories
 ---> Running in 986437aaad3a

#### Creating files and directories
mkdir: created directory '/var/mycodo'
mkdir: created directory '/var/mycodo/log'
mkdir: created directory '/var/mycodo/database'
mkdir: created directory '/var/mycodo/lock'
mkdir: created directory '/var/mycodo/ssl_certs'
mkdir: created directory '/var/mycodo/custom_inputs'
mkdir: created directory '/var/mycodo/Mycodo-backups'
mkdir: created directory '/var/mycodo/note_attachments'
Removing intermediate container 986437aaad3a
 ---> dc7007cea875
Step 6/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh update-apt-packages
 ---> Running in 1fb174ac669e

#### Installing prerequisite apt packages and update pip
Ign:1 http://deb.debian.org/debian stretch InRelease
Get:2 http://security.debian.org/debian-security stretch/updates InRelease [94.3 kB]
Get:3 http://deb.debian.org/debian stretch-updates InRelease [91.0 kB]
Get:4 http://deb.debian.org/debian stretch Release [118 kB]
Get:5 http://deb.debian.org/debian stretch Release.gpg [2434 B]
Get:6 http://security.debian.org/debian-security stretch/updates/main armhf Packages [464 kB]
Get:7 http://deb.debian.org/debian stretch-updates/main armhf Packages [10.8 kB]
Get:8 http://deb.debian.org/debian stretch/main armhf Packages [6913 kB]
Fetched 7694 kB in 5s (1324 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  binutils cpp cpp-6 gcc-6 git-man krb5-locales less libasan3 libatomic1
  libbsd0 libc-dev-bin libc6-dev libcc1-0 libcurl3-gnutls libedit2
  liberror-perl libgcc-6-dev libgmp10 libgnutls30 libgomp1 libgpm2
  libgssapi-krb5-2 libhogweed4 libidn11 libidn2-0 libio-pty-perl
  libipc-run-perl libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 libldap-common libmpc3 libmpfr4 libncurses5 libnettle6
  libnghttp2-14 libp11-kit0 libperl5.24 libpopt0 libpsl5 librtmp1 libsasl2-2
  libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6
  libubsan0 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxmuu1 linux-libc-dev manpages manpages-dev openssh-client patch
  perl perl-modules-5.24 publicsuffix rename rsync xauth
Suggested packages:
  binutils-doc cpp-doc gcc-6-locales gcc-multilib make autoconf automake
  libtool flex bison gdb gcc-doc gcc-6-doc libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-base
  git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk
  gitweb git-arch git-cvs git-mediawiki git-svn glibc-doc gnutls-bin gpm
  krb5-doc krb5-user libsasl2-modules-gssapi-mit
  | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp
  libsasl2-modules-sql man-browser libtime-duration-perl libtimedate-perl
  keychain libpam-ssh monkeysphere ssh-askpass ed diffutils-doc perl-doc
  libterm-readline-gnu-perl | libterm-readline-perl-perl openssh-server
The following NEW packages will be installed:
  binutils cpp cpp-6 gcc gcc-6 git git-man krb5-locales less libasan3
  libatomic1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libcurl3-gnutls libedit2
  liberror-perl libffi-dev libgcc-6-dev libgmp10 libgnutls30 libgomp1 libgpm2
  libgssapi-krb5-2 libhogweed4 libidn11 libidn2-0 libio-pty-perl
  libipc-run-perl libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 libldap-common libmpc3 libmpfr4 libncurses5 libnettle6
  libnghttp2-14 libp11-kit0 libperl5.24 libpopt0 libpsl5 librtmp1 libsasl2-2
  libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6
  libubsan0 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
  libxext6 libxmuu1 linux-libc-dev manpages manpages-dev moreutils
  openssh-client patch perl perl-modules-5.24 publicsuffix rename rsync wget
  xauth
0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
Need to get 43.4 MB of archives.
After this operation, 155 MB of additional disk space will be used.
Get:1 http://deb.debian.org/debian stretch/main armhf perl-modules-5.24 all 5.24.1-3+deb9u5 [2722 kB]
Get:2 http://deb.debian.org/debian stretch/main armhf libperl5.24 armhf 5.24.1-3+deb9u5 [2850 kB]
Get:3 http://deb.debian.org/debian stretch/main armhf perl armhf 5.24.1-3+deb9u5 [219 kB]
Get:4 http://deb.debian.org/debian stretch/main armhf libgmp10 armhf 2:6.1.2+dfsg-1 [195 kB]
Get:5 http://deb.debian.org/debian stretch/main armhf libnettle6 armhf 3.3-1+b2 [211 kB]
Get:6 http://deb.debian.org/debian stretch/main armhf libhogweed4 armhf 3.3-1+b2 [126 kB]
Get:7 http://deb.debian.org/debian stretch/main armhf libidn11 armhf 1.33-1 [112 kB]
Get:8 http://deb.debian.org/debian stretch/main armhf libp11-kit0 armhf 0.23.3-2 [96.7 kB]
Get:9 http://deb.debian.org/debian stretch/main armhf libtasn1-6 armhf 4.10-1.1+deb9u1 [45.7 kB]
Get:10 http://deb.debian.org/debian stretch/main armhf libgnutls30 armhf 3.5.8-5+deb9u4 [841 kB]
Get:11 http://deb.debian.org/debian stretch/main armhf libkeyutils1 armhf 1.5.9-9 [11.8 kB]
Get:12 http://deb.debian.org/debian stretch/main armhf libkrb5support0 armhf 1.15-1+deb9u1 [58.0 kB]
Get:13 http://deb.debian.org/debian stretch/main armhf libk5crypto3 armhf 1.15-1+deb9u1 [117 kB]
Get:14 http://deb.debian.org/debian stretch/main armhf libkrb5-3 armhf 1.15-1+deb9u1 [267 kB]
Get:15 http://deb.debian.org/debian stretch/main armhf libgssapi-krb5-2 armhf 1.15-1+deb9u1 [133 kB]
Get:16 http://deb.debian.org/debian stretch/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [255 kB]
Get:17 http://deb.debian.org/debian stretch/main armhf libidn2-0 armhf 0.16-1+deb9u1 [58.8 kB]
Get:18 http://deb.debian.org/debian stretch/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.7 kB]
Get:19 http://deb.debian.org/debian stretch/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.2 kB]
Get:20 http://deb.debian.org/debian stretch/main armhf libldap-common all 2.4.44+dfsg-5+deb9u2 [85.5 kB]
Get:21 http://deb.debian.org/debian stretch/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-5+deb9u2 [197 kB]
Get:22 http://deb.debian.org/debian stretch/main armhf libnghttp2-14 armhf 1.18.1-1 [69.1 kB]
Get:23 http://deb.debian.org/debian stretch/main armhf libpsl5 armhf 0.17.0-3 [40.7 kB]
Get:24 http://deb.debian.org/debian stretch/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1+b1 [55.1 kB]
Get:25 http://deb.debian.org/debian stretch/main armhf libssh2-1 armhf 1.7.0-1 [128 kB]
Get:26 http://deb.debian.org/debian stretch/main armhf libcurl3-gnutls armhf 7.52.1-5+deb9u9 [262 kB]
Get:27 http://deb.debian.org/debian stretch/main armhf liberror-perl all 0.17024-1 [26.9 kB]
Get:28 http://deb.debian.org/debian stretch/main armhf git-man all 1:2.11.0-3+deb9u4 [1433 kB]
Get:29 http://deb.debian.org/debian stretch/main armhf git armhf 1:2.11.0-3+deb9u4 [3661 kB]
Get:30 http://security.debian.org/debian-security stretch/updates/main armhf libssl1.0.2 armhf 1.0.2r-1~deb9u1 [925 kB]
Get:31 http://security.debian.org/debian-security stretch/updates/main armhf openssh-client armhf 1:7.4p1-10+deb9u6 [742 kB]
Get:32 http://deb.debian.org/debian stretch/main armhf libxau6 armhf 1:1.0.8-1 [19.5 kB]
Get:33 http://deb.debian.org/debian stretch/main armhf libpopt0 armhf 1.16-10+b2 [46.1 kB]
Get:34 http://deb.debian.org/debian stretch/main armhf wget armhf 1.18-5+deb9u2 [781 kB]
Get:35 http://deb.debian.org/debian stretch/main armhf krb5-locales all 1.15-1+deb9u1 [93.8 kB]
Get:36 http://deb.debian.org/debian stretch/main armhf less armhf 481-2.1 [121 kB]
Get:37 http://deb.debian.org/debian stretch/main armhf libbsd0 armhf 0.8.3-1 [89.6 kB]
Get:38 http://deb.debian.org/debian stretch/main armhf libncurses5 armhf 6.0+20161126-1+deb9u2 [74.7 kB]
Get:39 http://deb.debian.org/debian stretch/main armhf libedit2 armhf 3.1-20160903-3 [69.9 kB]
Get:40 http://deb.debian.org/debian stretch/main armhf libgpm2 armhf 1.20.4-6.2+b1 [33.3 kB]
Get:41 http://deb.debian.org/debian stretch/main armhf manpages all 4.10-2 [1222 kB]
Get:42 http://deb.debian.org/debian stretch/main armhf binutils armhf 2.28-5 [3900 kB]
Get:43 http://deb.debian.org/debian stretch/main armhf libisl15 armhf 0.18-1 [441 kB]
Get:44 http://deb.debian.org/debian stretch/main armhf libmpfr4 armhf 3.1.5-1 [536 kB]
Get:45 http://deb.debian.org/debian stretch/main armhf libmpc3 armhf 1.0.3-1+b2 [32.6 kB]
Get:46 http://deb.debian.org/debian stretch/main armhf cpp-6 armhf 6.3.0-18+deb9u1 [5239 kB]
Get:47 http://deb.debian.org/debian stretch/main armhf cpp armhf 4:6.3.0-4 [18.7 kB]
Get:48 http://deb.debian.org/debian stretch/main armhf libcc1-0 armhf 6.3.0-18+deb9u1 [25.2 kB]
Get:49 http://deb.debian.org/debian stretch/main armhf libgomp1 armhf 6.3.0-18+deb9u1 [64.6 kB]
Get:50 http://deb.debian.org/debian stretch/main armhf libatomic1 armhf 6.3.0-18+deb9u1 [6010 B]
Get:51 http://deb.debian.org/debian stretch/main armhf libasan3 armhf 6.3.0-18+deb9u1 [284 kB]
Get:52 http://deb.debian.org/debian stretch/main armhf libubsan0 armhf 6.3.0-18+deb9u1 [92.9 kB]
Get:53 http://deb.debian.org/debian stretch/main armhf libgcc-6-dev armhf 6.3.0-18+deb9u1 [531 kB]
Get:54 http://deb.debian.org/debian stretch/main armhf gcc-6 armhf 6.3.0-18+deb9u1 [5511 kB]
Get:55 http://deb.debian.org/debian stretch/main armhf gcc armhf 4:6.3.0-4 [5212 B]
Get:56 http://deb.debian.org/debian stretch/main armhf libc-dev-bin armhf 2.24-11+deb9u4 [253 kB]
Get:57 http://deb.debian.org/debian stretch-updates/main armhf linux-libc-dev armhf 4.9.144-3.1 [1370 kB]
Get:58 http://deb.debian.org/debian stretch/main armhf libc6-dev armhf 2.24-11+deb9u4 [1995 kB]
Get:59 http://deb.debian.org/debian stretch/main armhf libffi-dev armhf 3.2.1-6 [160 kB]
Get:60 http://deb.debian.org/debian stretch/main armhf libio-pty-perl armhf 1:1.08-1.1+b2 [32.9 kB]
Get:61 http://deb.debian.org/debian stretch/main armhf libipc-run-perl all 0.94-1+deb9u1 [99.1 kB]
Get:62 http://deb.debian.org/debian stretch/main armhf libsasl2-modules armhf 2.1.27~101-g0780600+dfsg-3 [96.0 kB]
Get:63 http://deb.debian.org/debian stretch/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB]
Get:64 http://deb.debian.org/debian stretch/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:65 http://deb.debian.org/debian stretch/main armhf libx11-data all 2:1.6.4-3+deb9u1 [287 kB]
Get:66 http://deb.debian.org/debian stretch/main armhf libx11-6 armhf 2:1.6.4-3+deb9u1 [692 kB]
Get:67 http://deb.debian.org/debian stretch/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB]
Get:68 http://deb.debian.org/debian stretch/main armhf libxmuu1 armhf 2:1.1.2-2 [22.9 kB]
Get:69 http://deb.debian.org/debian stretch/main armhf manpages-dev all 4.10-2 [2145 kB]
Get:70 http://deb.debian.org/debian stretch/main armhf moreutils armhf 0.60-1 [67.9 kB]
Get:71 http://deb.debian.org/debian stretch/main armhf patch armhf 2.7.5-1+deb9u1 [106 kB]
Get:72 http://deb.debian.org/debian stretch/main armhf rename all 0.20-4 [12.5 kB]
Get:73 http://deb.debian.org/debian stretch/main armhf rsync armhf 3.1.2-1+deb9u1 [380 kB]
Get:74 http://deb.debian.org/debian stretch/main armhf xauth armhf 1:1.0.9-1+b2 [36.7 kB]
Get:75 http://deb.debian.org/debian stretch/main armhf publicsuffix all 20181003.1334-0+deb9u1 [104 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 43.4 MB in 13s (3308 kB/s)
Selecting previously unselected package perl-modules-5.24.
(Reading database ... 6703 files and directories currently installed.)
Preparing to unpack .../00-perl-modules-5.24_5.24.1-3+deb9u5_all.deb ...
Unpacking perl-modules-5.24 (5.24.1-3+deb9u5) ...
Selecting previously unselected package libperl5.24:armhf.
Preparing to unpack .../01-libperl5.24_5.24.1-3+deb9u5_armhf.deb ...
Unpacking libperl5.24:armhf (5.24.1-3+deb9u5) ...
Selecting previously unselected package perl.
Preparing to unpack .../02-perl_5.24.1-3+deb9u5_armhf.deb ...
Unpacking perl (5.24.1-3+deb9u5) ...
Selecting previously unselected package libgmp10:armhf.
Preparing to unpack .../03-libgmp10_2%3a6.1.2+dfsg-1_armhf.deb ...
Unpacking libgmp10:armhf (2:6.1.2+dfsg-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../04-libnettle6_3.3-1+b2_armhf.deb ...
Unpacking libnettle6:armhf (3.3-1+b2) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../05-libhogweed4_3.3-1+b2_armhf.deb ...
Unpacking libhogweed4:armhf (3.3-1+b2) ...
Selecting previously unselected package libidn11:armhf.
Preparing to unpack .../06-libidn11_1.33-1_armhf.deb ...
Unpacking libidn11:armhf (1.33-1) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../07-libp11-kit0_0.23.3-2_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.3-2) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../08-libtasn1-6_4.10-1.1+deb9u1_armhf.deb ...
Unpacking libtasn1-6:armhf (4.10-1.1+deb9u1) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../09-libgnutls30_3.5.8-5+deb9u4_armhf.deb ...
Unpacking libgnutls30:armhf (3.5.8-5+deb9u4) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../10-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../11-libkrb5support0_1.15-1+deb9u1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.15-1+deb9u1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../12-libk5crypto3_1.15-1+deb9u1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.15-1+deb9u1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../13-libkrb5-3_1.15-1+deb9u1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.15-1+deb9u1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../14-libgssapi-krb5-2_1.15-1+deb9u1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.15-1+deb9u1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../15-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package libidn2-0:armhf.
Preparing to unpack .../16-libidn2-0_0.16-1+deb9u1_armhf.deb ...
Unpacking libidn2-0:armhf (0.16-1+deb9u1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../17-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../18-libsasl2-2_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libldap-common.
Preparing to unpack .../19-libldap-common_2.4.44+dfsg-5+deb9u2_all.deb ...
Unpacking libldap-common (2.4.44+dfsg-5+deb9u2) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../20-libldap-2.4-2_2.4.44+dfsg-5+deb9u2_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.44+dfsg-5+deb9u2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../21-libnghttp2-14_1.18.1-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.18.1-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../22-libpsl5_0.17.0-3_armhf.deb ...
Unpacking libpsl5:armhf (0.17.0-3) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../23-librtmp1_2.4+20151223.gitfa8646d.1-1+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../24-libssh2-1_1.7.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.7.0-1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../25-libcurl3-gnutls_7.52.1-5+deb9u9_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.52.1-5+deb9u9) ...
Selecting previously unselected package liberror-perl.
Preparing to unpack .../26-liberror-perl_0.17024-1_all.deb ...
Unpacking liberror-perl (0.17024-1) ...
Selecting previously unselected package git-man.
Preparing to unpack .../27-git-man_1%3a2.11.0-3+deb9u4_all.deb ...
Unpacking git-man (1:2.11.0-3+deb9u4) ...
Selecting previously unselected package git.
Preparing to unpack .../28-git_1%3a2.11.0-3+deb9u4_armhf.deb ...
Unpacking git (1:2.11.0-3+deb9u4) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../29-libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libpopt0:armhf.
Preparing to unpack .../30-libpopt0_1.16-10+b2_armhf.deb ...
Unpacking libpopt0:armhf (1.16-10+b2) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../31-libssl1.0.2_1.0.2r-1~deb9u1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2r-1~deb9u1) ...
Selecting previously unselected package wget.
Preparing to unpack .../32-wget_1.18-5+deb9u2_armhf.deb ...
Unpacking wget (1.18-5+deb9u2) ...
Selecting previously unselected package krb5-locales.
Preparing to unpack .../33-krb5-locales_1.15-1+deb9u1_all.deb ...
Unpacking krb5-locales (1.15-1+deb9u1) ...
Selecting previously unselected package less.
Preparing to unpack .../34-less_481-2.1_armhf.deb ...
Unpacking less (481-2.1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../35-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package libncurses5:armhf.
Preparing to unpack .../36-libncurses5_6.0+20161126-1+deb9u2_armhf.deb ...
Unpacking libncurses5:armhf (6.0+20161126-1+deb9u2) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../37-libedit2_3.1-20160903-3_armhf.deb ...
Unpacking libedit2:armhf (3.1-20160903-3) ...
Selecting previously unselected package libgpm2:armhf.
Preparing to unpack .../38-libgpm2_1.20.4-6.2+b1_armhf.deb ...
Unpacking libgpm2:armhf (1.20.4-6.2+b1) ...
Selecting previously unselected package manpages.
Preparing to unpack .../39-manpages_4.10-2_all.deb ...
Unpacking manpages (4.10-2) ...
Selecting previously unselected package openssh-client.
Preparing to unpack .../40-openssh-client_1%3a7.4p1-10+deb9u6_armhf.deb ...
Unpacking openssh-client (1:7.4p1-10+deb9u6) ...
Selecting previously unselected package binutils.
Preparing to unpack .../41-binutils_2.28-5_armhf.deb ...
Unpacking binutils (2.28-5) ...
Selecting previously unselected package libisl15:armhf.
Preparing to unpack .../42-libisl15_0.18-1_armhf.deb ...
Unpacking libisl15:armhf (0.18-1) ...
Selecting previously unselected package libmpfr4:armhf.
Preparing to unpack .../43-libmpfr4_3.1.5-1_armhf.deb ...
Unpacking libmpfr4:armhf (3.1.5-1) ...
Selecting previously unselected package libmpc3:armhf.
Preparing to unpack .../44-libmpc3_1.0.3-1+b2_armhf.deb ...
Unpacking libmpc3:armhf (1.0.3-1+b2) ...
Selecting previously unselected package cpp-6.
Preparing to unpack .../45-cpp-6_6.3.0-18+deb9u1_armhf.deb ...
Unpacking cpp-6 (6.3.0-18+deb9u1) ...
Selecting previously unselected package cpp.
Preparing to unpack .../46-cpp_4%3a6.3.0-4_armhf.deb ...
Unpacking cpp (4:6.3.0-4) ...
Selecting previously unselected package libcc1-0:armhf.
Preparing to unpack .../47-libcc1-0_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libcc1-0:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package libgomp1:armhf.
Preparing to unpack .../48-libgomp1_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libgomp1:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package libatomic1:armhf.
Preparing to unpack .../49-libatomic1_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libatomic1:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package libasan3:armhf.
Preparing to unpack .../50-libasan3_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libasan3:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package libubsan0:armhf.
Preparing to unpack .../51-libubsan0_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libubsan0:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package libgcc-6-dev:armhf.
Preparing to unpack .../52-libgcc-6-dev_6.3.0-18+deb9u1_armhf.deb ...
Unpacking libgcc-6-dev:armhf (6.3.0-18+deb9u1) ...
Selecting previously unselected package gcc-6.
Preparing to unpack .../53-gcc-6_6.3.0-18+deb9u1_armhf.deb ...
Unpacking gcc-6 (6.3.0-18+deb9u1) ...
Selecting previously unselected package gcc.
Preparing to unpack .../54-gcc_4%3a6.3.0-4_armhf.deb ...
Unpacking gcc (4:6.3.0-4) ...
Selecting previously unselected package libc-dev-bin.
Preparing to unpack .../55-libc-dev-bin_2.24-11+deb9u4_armhf.deb ...
Unpacking libc-dev-bin (2.24-11+deb9u4) ...
Selecting previously unselected package linux-libc-dev:armhf.
Preparing to unpack .../56-linux-libc-dev_4.9.144-3.1_armhf.deb ...
Unpacking linux-libc-dev:armhf (4.9.144-3.1) ...
Selecting previously unselected package libc6-dev:armhf.
Preparing to unpack .../57-libc6-dev_2.24-11+deb9u4_armhf.deb ...
Unpacking libc6-dev:armhf (2.24-11+deb9u4) ...
Selecting previously unselected package libffi-dev:armhf.
Preparing to unpack .../58-libffi-dev_3.2.1-6_armhf.deb ...
Unpacking libffi-dev:armhf (3.2.1-6) ...
Selecting previously unselected package libio-pty-perl.
Preparing to unpack .../59-libio-pty-perl_1%3a1.08-1.1+b2_armhf.deb ...
Unpacking libio-pty-perl (1:1.08-1.1+b2) ...
Selecting previously unselected package libipc-run-perl.
Preparing to unpack .../60-libipc-run-perl_0.94-1+deb9u1_all.deb ...
Unpacking libipc-run-perl (0.94-1+deb9u1) ...
Selecting previously unselected package libsasl2-modules:armhf.
Preparing to unpack .../61-libsasl2-modules_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-modules:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../62-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../63-libxcb1_1.12-1_armhf.deb ...
Unpacking libxcb1:armhf (1.12-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../64-libx11-data_2%3a1.6.4-3+deb9u1_all.deb ...
Unpacking libx11-data (2:1.6.4-3+deb9u1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../65-libx11-6_2%3a1.6.4-3+deb9u1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.4-3+deb9u1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../66-libxext6_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../67-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package manpages-dev.
Preparing to unpack .../68-manpages-dev_4.10-2_all.deb ...
Unpacking manpages-dev (4.10-2) ...
Selecting previously unselected package moreutils.
Preparing to unpack .../69-moreutils_0.60-1_armhf.deb ...
Unpacking moreutils (0.60-1) ...
Selecting previously unselected package patch.
Preparing to unpack .../70-patch_2.7.5-1+deb9u1_armhf.deb ...
Unpacking patch (2.7.5-1+deb9u1) ...
Selecting previously unselected package rename.
Preparing to unpack .../71-rename_0.20-4_all.deb ...
Unpacking rename (0.20-4) ...
Selecting previously unselected package rsync.
Preparing to unpack .../72-rsync_3.1.2-1+deb9u1_armhf.deb ...
Unpacking rsync (3.1.2-1+deb9u1) ...
Selecting previously unselected package xauth.
Preparing to unpack .../73-xauth_1%3a1.0.9-1+b2_armhf.deb ...
Unpacking xauth (1:1.0.9-1+b2) ...
Selecting previously unselected package publicsuffix.
Preparing to unpack .../74-publicsuffix_20181003.1334-0+deb9u1_all.deb ...
Unpacking publicsuffix (20181003.1334-0+deb9u1) ...
Setting up libncurses5:armhf (6.0+20161126-1+deb9u2) ...
Setting up libgomp1:armhf (6.3.0-18+deb9u1) ...
Setting up libatomic1:armhf (6.3.0-18+deb9u1) ...
Setting up perl-modules-5.24 (5.24.1-3+deb9u5) ...
Setting up manpages (4.10-2) ...
Setting up libperl5.24:armhf (5.24.1-3+deb9u5) ...
Setting up libnettle6:armhf (3.3-1+b2) ...
Setting up git-man (1:2.11.0-3+deb9u4) ...
Setting up libpopt0:armhf (1.16-10+b2) ...
Setting up libcc1-0:armhf (6.3.0-18+deb9u1) ...
Setting up less (481-2.1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Setting up libasan3:armhf (6.3.0-18+deb9u1) ...
Setting up libnghttp2-14:armhf (1.18.1-1) ...
Setting up libgpm2:armhf (1.20.4-6.2+b1) ...
Setting up libldap-common (2.4.44+dfsg-5+deb9u2) ...
Setting up libubsan0:armhf (6.3.0-18+deb9u1) ...
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up linux-libc-dev:armhf (4.9.144-3.1) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up libffi-dev:armhf (3.2.1-6) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libtasn1-6:armhf (4.10-1.1+deb9u1) ...
Setting up rsync (3.1.2-1+deb9u1) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up perl (5.24.1-3+deb9u5) ...
update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/rename.1.gz because associated file /usr/share/man/man1/prename.1.gz (of link group rename) doesn't exist
Setting up libssl1.0.2:armhf (1.0.2r-1~deb9u1) ...
debconf: unable to initialize frontend: Dialog
debconf: (TERM is not set, so the dialog frontend is not usable.)
debconf: falling back to frontend: Readline
Setting up libgmp10:armhf (2:6.1.2+dfsg-1) ...
Setting up libssh2-1:armhf (1.7.0-1) ...
Setting up patch (2.7.5-1+deb9u1) ...
Setting up krb5-locales (1.15-1+deb9u1) ...
Processing triggers for libc-bin (2.24-11+deb9u4) ...
Setting up publicsuffix (20181003.1334-0+deb9u1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libp11-kit0:armhf (0.23.3-2) ...
Setting up libmpfr4:armhf (3.1.5-1) ...
Setting up libmpc3:armhf (1.0.3-1+b2) ...
Setting up binutils (2.28-5) ...
Setting up libc-dev-bin (2.24-11+deb9u4) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up libsasl2-modules:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up manpages-dev (4.10-2) ...
Setting up libc6-dev:armhf (2.24-11+deb9u4) ...
Setting up libx11-data (2:1.6.4-3+deb9u1) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libidn11:armhf (1.33-1) ...
Setting up libedit2:armhf (3.1-20160903-3) ...
Setting up libidn2-0:armhf (0.16-1+deb9u1) ...
Setting up libgcc-6-dev:armhf (6.3.0-18+deb9u1) ...
Setting up libio-pty-perl (1:1.08-1.1+b2) ...
Setting up liberror-perl (0.17024-1) ...
Setting up rename (0.20-4) ...
update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/rename.1.gz because associated file /usr/share/man/man1/file-rename.1p.gz (of link group rename) doesn't exist
Setting up libpsl5:armhf (0.17.0-3) ...
Setting up libkrb5support0:armhf (1.15-1+deb9u1) ...
Setting up libhogweed4:armhf (3.3-1+b2) ...
Setting up libisl15:armhf (0.18-1) ...
Setting up libipc-run-perl (0.94-1+deb9u1) ...
Setting up cpp-6 (6.3.0-18+deb9u1) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up cpp (4:6.3.0-4) ...
Setting up libk5crypto3:armhf (1.15-1+deb9u1) ...
Setting up libgnutls30:armhf (3.5.8-5+deb9u4) ...
Setting up libx11-6:armhf (2:1.6.4-3+deb9u1) ...
Setting up moreutils (0.60-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1+b1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gcc-6 (6.3.0-18+deb9u1) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-5+deb9u2) ...
Setting up wget (1.18-5+deb9u2) ...
Setting up libkrb5-3:armhf (1.15-1+deb9u1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up gcc (4:6.3.0-4) ...
Setting up libgssapi-krb5-2:armhf (1.15-1+deb9u1) ...
Setting up xauth (1:1.0.9-1+b2) ...
Setting up openssh-client (1:7.4p1-10+deb9u6) ...
Setting up libcurl3-gnutls:armhf (7.52.1-5+deb9u9) ...
Setting up git (1:2.11.0-3+deb9u4) ...
Processing triggers for libc-bin (2.24-11+deb9u4) ...
Removing intermediate container 1fb174ac669e
 ---> a51422239b47
Step 7/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh update-pip
 ---> Running in c0f44274161a

#### Updating pip
Requirement already up-to-date: pip in /usr/local/lib/python3.6/site-packages (19.0.3)
Removing intermediate container c0f44274161a
 ---> bdbe21508eb5
Step 8/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh update-pip-packages
 ---> Running in ed10f052da02

#### Installing pip requirements from requirements.txt
Requirement already up-to-date: pip in /usr/local/lib/python3.6/site-packages (19.0.3)
Requirement already up-to-date: setuptools in /usr/local/lib/python3.6/site-packages (40.8.0)
Collecting alembic==1.0.8 (from -r /home/mycodo/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/d6/bb/ec1e21f2e303689ad2170eb47fc67df9ad4199ade6759a99474c4d3535c8/alembic-1.0.8.tar.gz (1.0MB)
Collecting argparse==1.4.0 (from -r /home/mycodo/requirements.txt (line 2))
  Downloading https://files.pythonhosted.org/packages/f2/94/3af39d34be01a24a6e65433d19e107099374224905f1e0cc6bbe1fd22a2f/argparse-1.4.0-py2.py3-none-any.whl
Collecting bcrypt==3.1.4 (from -r /home/mycodo/requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/f3/ec/bb6b384b5134fd881b91b6aa3a88ccddaad0103857760711a5ab8c799358/bcrypt-3.1.4.tar.gz (42kB)
Collecting Flask==1.0.2 (from -r /home/mycodo/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/7f/e7/08578774ed4536d3242b14dacb4696386634607af824ea997202cd0edb4b/Flask-1.0.2-py2.py3-none-any.whl (91kB)
Collecting Flask_Babel==0.12.2 (from -r /home/mycodo/requirements.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/82/b0/986b29938d4e8be7deb552ebfd1ef16c311276a59bcae10dec567a5b3d20/Flask-Babel-0.12.2.tar.gz (44kB)
Collecting Flask_Compress==1.4.0 (from -r /home/mycodo/requirements.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/0e/2a/378bd072928f6d92fd8c417d66b00c757dc361c0405a46a0134de6fd323d/Flask-Compress-1.4.0.tar.gz
Collecting Flask_CSV==1.2.0 (from -r /home/mycodo/requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/27/c8/e822673a0e5add39315eba04a28c84301aa5dedd99e834c3319fe212c09c/Flask-CSV-1.2.0.tar.gz
Collecting Flask_InfluxDB==0.2 (from -r /home/mycodo/requirements.txt (line 8))
  Downloading https://files.pythonhosted.org/packages/fa/c9/bb1ce39ed08fb859dd880461429292783588353d92702d0bef7d179a1616/Flask_InfluxDB-0.2-py3-none-any.whl
Collecting Flask_Limiter==1.0.1 (from -r /home/mycodo/requirements.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/56/22/70ff505dc4982ce23838da00c2ab580e95cfbe9814713fb0318898fd9191/Flask-Limiter-1.0.1.tar.gz (89kB)
Collecting Flask_Login==0.4.1 (from -r /home/mycodo/requirements.txt (line 10))
  Downloading https://files.pythonhosted.org/packages/c1/ff/bd9a4d2d81bf0c07d9e53e8cd3d675c56553719bbefd372df69bf1b3c1e4/Flask-Login-0.4.1.tar.gz
Collecting Flask_SQLAlchemy==2.3.2 (from -r /home/mycodo/requirements.txt (line 11))
  Downloading https://files.pythonhosted.org/packages/a1/44/294fb7f6bf49cc7224417cd0637018db9fee0729b4fe166e43e2bbb1f1c8/Flask_SQLAlchemy-2.3.2-py2.py3-none-any.whl
Collecting Flask_SSLify==0.1.5 (from -r /home/mycodo/requirements.txt (line 12))
  Downloading https://files.pythonhosted.org/packages/6e/98/54f2ffaf886d25eb1591cfb534c04cbf983236d657d58d180fd9ccbb5e7f/Flask-SSLify-0.1.5.tar.gz
Collecting Flask_WTF==0.14.2 (from -r /home/mycodo/requirements.txt (line 13))
  Downloading https://files.pythonhosted.org/packages/60/3a/58c629472d10539ae5167dc7c1fecfa95dd7d0b7864623931e3776438a24/Flask_WTF-0.14.2-py2.py3-none-any.whl
Collecting geocoder==1.38.1 (from -r /home/mycodo/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/4f/6b/13166c909ad2f2d76b929a4227c952630ebaf0d729f6317eb09cbceccbab/geocoder-1.38.1-py2.py3-none-any.whl (98kB)
Collecting gunicorn==19.9.0 (from -r /home/mycodo/requirements.txt (line 15))
  Downloading https://files.pythonhosted.org/packages/8c/da/b8dd8deb741bff556db53902d4706774c8e1e67265f69528c14c003644e6/gunicorn-19.9.0-py2.py3-none-any.whl (112kB)
Collecting influxdb==5.0.0 (from -r /home/mycodo/requirements.txt (line 16))
  Downloading https://files.pythonhosted.org/packages/8d/79/7972c12e393080eda6920583c9c2ed2206771da7f6341c8971a2c02ff3d3/influxdb-5.0.0-py2.py3-none-any.whl (70kB)
Collecting locket==0.2.0 (from -r /home/mycodo/requirements.txt (line 17))
  Downloading https://files.pythonhosted.org/packages/d0/22/3c0f97614e0be8386542facb3a7dcfc2584f7b83608c02333bced641281c/locket-0.2.0.tar.gz
Collecting pylint (from -r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/60/c2/b3f73f4ac008bef6e75bca4992f3963b3f85942e0277237721ef1c151f0d/pylint-2.3.1-py3-none-any.whl (765kB)
Collecting pyserial (from -r /home/mycodo/requirements.txt (line 19))
  Downloading https://files.pythonhosted.org/packages/0d/e4/2a744dd9e3be04a0c0907414e2a01a7c88bb3915cbe3c8cc06e209f59c30/pyserial-3.4-py2.py3-none-any.whl (193kB)
Collecting python-dateutil==2.8.0 (from -r /home/mycodo/requirements.txt (line 20))
  Downloading https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl (226kB)
Collecting requests (from -r /home/mycodo/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl (57kB)
Collecting rpyc==4.0.2 (from -r /home/mycodo/requirements.txt (line 22))
  Downloading https://files.pythonhosted.org/packages/ba/88/1cea477a4ad7c0f546a4c82aa367185be7b8fce512db8283e82de8454772/rpyc-4.0.2.tar.gz (53kB)
Collecting SQLAlchemy==1.3.1 (from -r /home/mycodo/requirements.txt (line 23))
  Downloading https://files.pythonhosted.org/packages/85/29/d7a5687d0d21ea8133f2d4ef02dfb4d191afe7ebc8bd9f962d99bdf595e1/SQLAlchemy-1.3.1.tar.gz (5.9MB)
Collecting WTForms==2.2.1 (from -r /home/mycodo/requirements.txt (line 24))
  Downloading https://files.pythonhosted.org/packages/9f/c8/dac5dce9908df1d9d48ec0e26e2a250839fa36ea2c602cc4f85ccfeb5c65/WTForms-2.2.1-py2.py3-none-any.whl (166kB)
Collecting Mako (from alembic==1.0.8->-r /home/mycodo/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/eb/69/6137c60cae2ab8c911bff510bb6d1d23a0189f75d114bb277606c6486b5f/Mako-1.0.8.tar.gz (468kB)
Collecting python-editor>=0.3 (from alembic==1.0.8->-r /home/mycodo/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/c6/d3/201fc3abe391bbae6606e6f1d598c15d367033332bd54352b12f35513717/python_editor-1.0.4-py3-none-any.whl
Collecting cffi>=1.1 (from bcrypt==3.1.4->-r /home/mycodo/requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/64/7c/27367b38e6cc3e1f49f193deb761fe75cda9f95da37b67b422e62281fcac/cffi-1.12.2.tar.gz (453kB)
Collecting six>=1.4.1 (from bcrypt==3.1.4->-r /home/mycodo/requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting click>=5.1 (from Flask==1.0.2->-r /home/mycodo/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl (81kB)
Collecting Werkzeug>=0.14 (from Flask==1.0.2->-r /home/mycodo/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/29/5e/d54398f8ee78166d2cf07e46d19096e55aba506e44de998a1ad85b83ec8d/Werkzeug-0.15.0-py2.py3-none-any.whl (328kB)
Collecting itsdangerous>=0.24 (from Flask==1.0.2->-r /home/mycodo/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/76/ae/44b03b253d6fade317f32c24d100b3b35c2239807046a4c953c7b89fa49e/itsdangerous-1.1.0-py2.py3-none-any.whl
Collecting Jinja2>=2.10 (from Flask==1.0.2->-r /home/mycodo/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl (126kB)
Collecting Babel>=2.3 (from Flask_Babel==0.12.2->-r /home/mycodo/requirements.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/b8/ad/c6f60602d3ee3d92fbed87675b6fb6a6f9a38c223343ababdb44ba201f10/Babel-2.6.0-py2.py3-none-any.whl (8.1MB)
Collecting csvalidate (from Flask_CSV==1.2.0->-r /home/mycodo/requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/be/4e/039798c21e8297fd59629c96ba5ad62806245c6ea6d5a36647f71d0a6963/csvalidate-1.1.1.tar.gz
Collecting marshmallow (from Flask_CSV==1.2.0->-r /home/mycodo/requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/77/a3/4a9bf148dbe336ad068cc413f3683f9c275ea31f94ec05d19ea75f580b7b/marshmallow-2.19.1-py2.py3-none-any.whl (49kB)
Collecting limits (from Flask_Limiter==1.0.1->-r /home/mycodo/requirements.txt (line 9))
  Downloading https://files.pythonhosted.org/packages/62/97/27fbc02dcae873d2e12995d882a02ceab1cb8f7726f64e7f290351e1a13b/limits-1.3.tar.gz
Collecting ratelim (from geocoder==1.38.1->-r /home/mycodo/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/f2/98/7e6d147fd16a10a5f821db6e25f192265d6ecca3d82957a4fdd592cad49c/ratelim-0.1.6-py2.py3-none-any.whl
Collecting future (from geocoder==1.38.1->-r /home/mycodo/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB)
Collecting pytz (from influxdb==5.0.0->-r /home/mycodo/requirements.txt (line 16))
  Downloading https://files.pythonhosted.org/packages/61/28/1d3920e4d1d50b19bc5d24398a7cd85cc7b9a75a490570d5a30c57622d34/pytz-2018.9-py2.py3-none-any.whl (510kB)
Collecting astroid<3,>=2.2.0 (from pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/d5/ad/7221a62a2dbce5c3b8c57fd18e1052c7331adc19b3f27f1561aa6e620db2/astroid-2.2.5-py3-none-any.whl (193kB)
Collecting mccabe<0.7,>=0.6 (from pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/87/89/479dc97e18549e21354893e4ee4ef36db1d237534982482c3681ee6e7b57/mccabe-0.6.1-py2.py3-none-any.whl
Collecting isort<5,>=4.2.5 (from pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/b6/89/3137d13dd30a0d063435661950f6dfd50957532989e49aef652f490ef616/isort-4.3.15-py2.py3-none-any.whl (42kB)
Collecting certifi>=2017.4.17 (from requests->-r /home/mycodo/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/60/75/f692a584e85b7eaba0e03827b3d51f45f571c2e793dd731e598828d380aa/certifi-2019.3.9-py2.py3-none-any.whl (158kB)
Collecting urllib3<1.25,>=1.21.1 (from requests->-r /home/mycodo/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl (118kB)
Collecting idna<2.9,>=2.5 (from requests->-r /home/mycodo/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB)
Collecting chardet<3.1.0,>=3.0.2 (from requests->-r /home/mycodo/requirements.txt (line 21))
  Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB)
Collecting plumbum (from rpyc==4.0.2->-r /home/mycodo/requirements.txt (line 22))
  Downloading https://files.pythonhosted.org/packages/48/48/0c592a65c8ecc6a4c0da41d75097704a283595b6731be1531eee3f4f7778/plumbum-1.6.7-py2.py3-none-any.whl (110kB)
Collecting MarkupSafe>=0.9.2 (from Mako->alembic==1.0.8->-r /home/mycodo/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/b9/2e/64db92e53b86efccfaea71321f597fa2e1b2bd3853d8ce658568f7a13094/MarkupSafe-1.1.1.tar.gz
Collecting pycparser (from cffi>=1.1->bcrypt==3.1.4->-r /home/mycodo/requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/68/9e/49196946aee219aead1290e00d1e7fdeab8567783e83e1b9ab5585e6206a/pycparser-2.19.tar.gz (158kB)
Collecting decorator (from ratelim->geocoder==1.38.1->-r /home/mycodo/requirements.txt (line 14))
  Downloading https://files.pythonhosted.org/packages/5f/88/0075e461560a1e750a0dcbf77f1d9de775028c37a19a346a6c565a257399/decorator-4.4.0-py2.py3-none-any.whl
Collecting lazy-object-proxy (from astroid<3,>=2.2.0->pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/55/08/23c0753599bdec1aec273e322f277c4e875150325f565017f6280549f554/lazy-object-proxy-1.3.1.tar.gz
Collecting typed-ast>=1.3.0; implementation_name == "cpython" (from astroid<3,>=2.2.0->pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/fc/c6/61d6410fc70fda073bd1810f9b7f7022f00146b108f278a0c00041bfe5b0/typed-ast-1.3.1.tar.gz (204kB)
Collecting wrapt (from astroid<3,>=2.2.0->pylint->-r /home/mycodo/requirements.txt (line 18))
  Downloading https://files.pythonhosted.org/packages/67/b2/0f71ca90b0ade7fad27e3d20327c996c6252a2ffe88f50a95bba7434eda9/wrapt-1.11.1.tar.gz
Installing collected packages: SQLAlchemy, MarkupSafe, Mako, python-editor, six, python-dateutil, alembic, argparse, pycparser, cffi, bcrypt, click, Werkzeug, itsdangerous, Jinja2, Flask, pytz, Babel, Flask-Babel, Flask-Compress, csvalidate, marshmallow, Flask-CSV, certifi, urllib3, idna, chardet, requests, influxdb, Flask-InfluxDB, limits, Flask-Limiter, Flask-Login, Flask-SQLAlchemy, Flask-SSLify, WTForms, Flask-WTF, decorator, ratelim, future, geocoder, gunicorn, locket, lazy-object-proxy, typed-ast, wrapt, astroid, mccabe, isort, pylint, pyserial, plumbum, rpyc
  Running setup.py install for SQLAlchemy: started
    Running setup.py install for SQLAlchemy: finished with status 'done'
  Running setup.py install for MarkupSafe: started
    Running setup.py install for MarkupSafe: finished with status 'done'
  Running setup.py install for Mako: started
    Running setup.py install for Mako: finished with status 'done'
  Running setup.py install for alembic: started
    Running setup.py install for alembic: finished with status 'done'
  Running setup.py install for pycparser: started
    Running setup.py install for pycparser: finished with status 'done'
  Running setup.py install for cffi: started
    Running setup.py install for cffi: finished with status 'done'
  Running setup.py install for bcrypt: started
    Running setup.py install for bcrypt: finished with status 'done'
  Running setup.py install for Flask-Babel: started
    Running setup.py install for Flask-Babel: finished with status 'done'
  Running setup.py install for Flask-Compress: started
    Running setup.py install for Flask-Compress: finished with status 'done'
  Running setup.py install for csvalidate: started
    Running setup.py install for csvalidate: finished with status 'done'
  Running setup.py install for Flask-CSV: started
    Running setup.py install for Flask-CSV: finished with status 'done'
  Running setup.py install for limits: started
    Running setup.py install for limits: finished with status 'done'
  Running setup.py install for Flask-Limiter: started
    Running setup.py install for Flask-Limiter: finished with status 'done'
  Running setup.py install for Flask-Login: started
    Running setup.py install for Flask-Login: finished with status 'done'
  Running setup.py install for Flask-SSLify: started
    Running setup.py install for Flask-SSLify: finished with status 'done'
  Running setup.py install for future: started
    Running setup.py install for future: finished with status 'done'
  Running setup.py install for locket: started
    Running setup.py install for locket: finished with status 'done'
  Running setup.py install for lazy-object-proxy: started
    Running setup.py install for lazy-object-proxy: finished with status 'done'
  Running setup.py install for typed-ast: started
    Running setup.py install for typed-ast: still running...
    Running setup.py install for typed-ast: finished with status 'done'
  Running setup.py install for wrapt: started
    Running setup.py install for wrapt: finished with status 'done'
  Running setup.py install for rpyc: started
    Running setup.py install for rpyc: finished with status 'done'
Successfully installed Babel-2.6.0 Flask-1.0.2 Flask-Babel-0.12.2 Flask-CSV-1.2.0 Flask-Compress-1.4.0 Flask-InfluxDB-0.2 Flask-Limiter-1.0.1 Flask-Login-0.4.1 Flask-SQLAlchemy-2.3.2 Flask-SSLify-0.1.5 Flask-WTF-0.14.2 Jinja2-2.10 Mako-1.0.8 MarkupSafe-1.1.1 SQLAlchemy-1.3.1 WTForms-2.2.1 Werkzeug-0.15.0 alembic-1.0.8 argparse-1.4.0 astroid-2.2.5 bcrypt-3.1.4 certifi-2019.3.9 cffi-1.12.2 chardet-3.0.4 click-7.0 csvalidate-1.1.1 decorator-4.4.0 future-0.17.1 geocoder-1.38.1 gunicorn-19.9.0 idna-2.8 influxdb-5.0.0 isort-4.3.15 itsdangerous-1.1.0 lazy-object-proxy-1.3.1 limits-1.3 locket-0.2.0 marshmallow-2.19.1 mccabe-0.6.1 plumbum-1.6.7 pycparser-2.19 pylint-2.3.1 pyserial-3.4 python-dateutil-2.8.0 python-editor-1.0.4 pytz-2018.9 ratelim-0.1.6 requests-2.21.0 rpyc-4.0.2 six-1.12.0 typed-ast-1.3.1 urllib3-1.24.1 wrapt-1.11.1
Removing intermediate container ed10f052da02
 ---> 797479dad6bc
Step 9/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh ssl-certs-generate
 ---> Running in 3b5bbc350c1a

#### Checking for SSL certificates in /var/mycodo/ssl_certs/

#### Generating SSL certificates in /var/mycodo/ssl_certs/
Generating RSA private key, 4096 bit long modulus
....................................................................................................................................................................................................................................................++++
...........................++++
e is 65537 (0x010001)
writing RSA key
Signature ok
subject=O = mycodo, OU = mycodo, CN = mycodo
Getting Private key
Removing intermediate container 3b5bbc350c1a
 ---> 3feb734f50d0
Step 10/10 : RUN /home/mycodo/mycodo/scripts/upgrade_commands.sh compile-translations
 ---> Running in 56cb67a91acd

#### Compiling Translations
compiling catalog mycodo_flask/translations/es/LC_MESSAGES/messages.po to mycodo_flask/translations/es/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/pt/LC_MESSAGES/messages.po to mycodo_flask/translations/pt/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/it/LC_MESSAGES/messages.po to mycodo_flask/translations/it/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/de/LC_MESSAGES/messages.po to mycodo_flask/translations/de/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/nb/LC_MESSAGES/messages.po to mycodo_flask/translations/nb/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/sv/LC_MESSAGES/messages.po to mycodo_flask/translations/sv/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/nl/LC_MESSAGES/messages.po to mycodo_flask/translations/nl/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/zh/LC_MESSAGES/messages.po to mycodo_flask/translations/zh/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/fr/LC_MESSAGES/messages.po to mycodo_flask/translations/fr/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/ru/LC_MESSAGES/messages.po to mycodo_flask/translations/ru/LC_MESSAGES/messages.mo
compiling catalog mycodo_flask/translations/sr/LC_MESSAGES/messages.po to mycodo_flask/translations/sr/LC_MESSAGES/messages.mo
Removing intermediate container 56cb67a91acd
 ---> fc98af08d7ac

Successfully built fc98af08d7ac
Successfully tagged app:latest
Building nginx
Step 1/7 : FROM nginx:1.15.9
1.15.9: Pulling from library/nginx
ecad9bd7ef0c: Already exists
f5cfe1bc5a80: Pull complete
b23447a4f47c: Pull complete
Digest: sha256:98efe605f61725fd817ea69521b0eeb32bef007af0e3d0aeb6258c6e6fe7fc1a
Status: Downloaded newer image for nginx:1.15.9
 ---> 9389658f86a0
Step 2/7 : RUN rm /etc/nginx/nginx.conf
 ---> Running in cce8a9a717f7
Removing intermediate container cce8a9a717f7
 ---> 9f7b3dec49cf
Step 3/7 : COPY nginx.conf /etc/nginx/
 ---> 9d9bd170a2e9
Step 4/7 : RUN rm /etc/nginx/conf.d/default.conf
 ---> Running in 832f6876e3e6
Removing intermediate container 832f6876e3e6
 ---> cee0013ca526
Step 5/7 : COPY project.conf /etc/nginx/conf.d/
 ---> b442270169e7
Step 6/7 : RUN mkdir -pv /var/mycodo
 ---> Running in 871a9c3f7753
mkdir: created directory '/var/mycodo'
Removing intermediate container 871a9c3f7753
 ---> 8bd0af5d1717
Step 7/7 : COPY 502.html /var/mycodo/
 ---> bbcfefa76198

Successfully built bbcfefa76198
Successfully tagged mycodo_nginx:latest
Creating influxdb ... done
Creating flask ... done
Creating nginx ... done
Creating daemon ... done
pi@everlast:~/Mycodo $

And guess what I got. Magic.

Gonna go explore now, however I have a few comments just for fun

Collecting itsdangerous>=0.24 (from Flask==1.0.2->-r /home/mycodo/requirements.txt (line 4))

That guy stole my best bad idea for a library.

The only misadventure was not adding 'sudo' to the 'make build' instruction. I'm starting to make a habit of writing instructions to include the 'sudo' and I bold the rest of the command-line. This makes it easy to cut and paste for lazy, root-less folks such as myself. I don't wanna be root. Being root warps the perceptions of usage, usually in unfortunate ways.

I have a GUI. Nice work Kyle!

I logged in and looked around a little so far. Will try some of the basic stuff and see what works.

I have this big smile right now. That saying about how 'nothing good ever happens after midnight' came from someone who was doing it wrong. At least that is my perspective.

[Theoi-Meteoroi]

Well the first thing I tried was a USB connected sensor - the MH-z19. I cannot change the port from hardware serial due to some access issue:

Error: Modify Input: Invalid device or improper permissions to read device

I tried changing perms on the device, that isn't the issue. Its a container thing. And don't I like a challenge. Containers are attractive to me because as you become more ambitious with Mycodo, the platform becomes the limiting factor, even with four cores. For straight forward PID tasks with a few sensors, the Pi is more than cost effective. As the sensors become more sophisticated or you are simply ambitious ( voice control, integration with other code ) containers could allow the kind of isolation that prevents total system failure when a feature doesn't work as expected. Like the code I write.

I will have to come back to this later. So much to do. But it is a beginning and that is pretty exciting. The OS can take this to a number of higher performance platforms if ported with that in mind. There may be a way (I think there is) to push most of the work and storage to a cloud instance and have a lower end device like the Pi be the real-world proxy. Once you program a PID, the work is local and the rest can be more or less done elsewhere. This provides scale, if needed and still maintain a single pane of glass for complex configurations. Anything built in the cloud can also be done on a local server with virtualization, if you are allergic to clouds.

[kizniche]

Glad to see it's running! Here are a few notes before I begin my own investigation into getting external sensors working:

The only misadventure was not adding 'sudo' to the 'make build' instruction. I'm starting to make a habit of writing instructions to include the 'sudo' and I bold the rest of the command-line. This makes it easy to cut and paste for lazy, root-less folks such as myself. I don't wanna be root. Being root warps the perceptions of usage, usually in unfortunate ways.

After you issued the command sudo usermod -aG docker pi to add your user to the docker group, you must log out and back in for it to take effect. Then you can call docker without root privileges.

I have this big smile right now. That saying about how 'nothing good ever happens after midnight' came from someone who was doing it wrong. At least that is my perspective.

😃

Well the first thing I tried was a USB connected sensor - the MH-z19. I cannot change the port from hardware serial due to some access issue:
Error: Modify Input: Invalid device or improper permissions to read device

I haven't attempted to do this yet, so I'll see how I can fix this. I have privileged: true in the docker-compose.yml file, which should give access to the system devices, but I haven't done much more than this to get external sensors working on the Mycodo end.

In other news, today I'm implementing my recently-built outdoor LoRaWAN gateway (photo attached) on my university farm and sending sensor data from the surrounding greenhouses to The Things Network before being acquired by Mycodo (or multiple Mycodos). I got the BME280 working on my TTGO T-Beam dev. platform last night and just recently added support for downloading data from The Things Network into Mycodo via a TTN Input module. I'm going to be working on a way to make this Input module able to have a variable number if measurements selected (opposed to the current hard-coded ones for just the BME280), then each measurement can have its own unit/measurement configured, so there won't be any limitation to the number or type of measurements.

[kizniche]

The gateway was successfully deployed on the farm and one node is currently measuring temperature, humidity, pressure, dew point, and vapor pressure deficit in one of the hydroponic greenhouses. Now to see if the system remains stable over a paltry cellular internet connection. I've already set up the Mycodo on the farm to download the data from TTN, just as I have at home, and it's working perfectly so far.

Regarding docker, I found the missing configuration settings I needed to detect devices after the container has started. I just pushed an update and successfully tested the MH-Z16/UART over USB, connected after the container started!

[kizniche]

I added Telegraf and Grafana to the docker build to experiment a bit with them. They were easily integrated, and add a new set of system monitoring and dashboard capability for Mycodo data. I'm not sure if they'll stay, but for the time being, they're included in the Docker build. I also fixed several issues with the dependency install script, moved everything to using Python 3, and successfully tested on a fresh install of Raspbian for everything to work.

[kizniche]

After much toiling, I have the latest version of Mycodo (8.1.1) running in Docker containers, without sacrificing its ability to be normally installed on a Raspberry Pi. I'll push my edits to master soon, after I tweak some of the volumes and directory structures. Here's it running on Ubuntu 18.04 (64-bit):