rename_figures.sh

#!/bin/bash
# this script copies and renames supplemental figures
# NOTE: run in supp_figs dir

#supplemental figure plots
cp ../drawing3.png Supplemental_Figure_S1.png
cp ../Absence_vs_Insertion.png Supplemental_Figure_S2.png
cp ../Histogram_TE_per_Strain_All.png Supplemental_Figure_S3.png
cp ../All_per_Strain.png Supplemental_Figure_S4.png
cp ../TETREE.png Supplemental_Figure_S5.png
cp ../Family_Frequency.png Supplemental_Figure_S6.png
cp ../Genic_Features.png Supplemental_Figure_S7.png
cp ../Aggregate_GWAS.png Supplemental_Figure_S8.png
#cp ../XX Supplemental_Figure_S9.png
cp ../te_progs.png Supplemental_Figure_S10.png
cp ../Combined_Insertion_DS.png Supplemental_Figure_S11.png
cp ../Combined_Insertion_RS.png Supplemental_Figure_S12.png
cp ../Combined_Insertion_PF.png Supplemental_Figure_S13.png
cp ../Combined_Temp.png Supplemental_Figure_S14.png
cp ../Combined_Telocate.png Supplemental_Figure_S15.png
cp ../Combined_Ins_Scatter.png Supplemental_Figure_S16.png
cp ../Combined_Ref_Scatter.png Supplemental_Figure_S17.png
cp ../Combined_Abs_Scatter.png Supplemental_Figure_S18.png
cp ../Contradictory_Calls.png Supplemental_Figure_S19.png
cp ../CER1_Contradictory_Calls.png Supplemental_Figure_S20.png
cp ../Absence_vs_Reference.png Supplemental_Figure_S21.png
cp ../Absence_vs_Reference_DR.png Supplemental_Figure_S22.png


#main figure plots
cp ../Chromosome_Distribution.tiff Fig_1.tiff
cp ../Histogram_TE_per_Strain_AF.tiff Fig_2.tiff
cp ../Absence_vs_Insertion_DR.tiff Fig_3.tiff
cp ../five_trait_QTL.tiff Fig_4.tiff
cp ../Obs_v_Ex_TEsb.tiff Obs_v_Ex_TEsb.tiff