|
5 | 5 | KNIME Image Processing Extension |
6 | 6 | ==== |
7 | 7 |
|
8 | | -The KNIME Image Processing Extension adds new nodes to KNIME (www.knime.org) to e.g. read more than 100 different kinds of images (thanks to the Bio-Formats API), apply well known methods for preprocessing, image segmentation and classification. Most of the included nodes operate on multi-dimensional image data (e.g. videos, 3D images, multi-channel images or even a combination of them), which is made possible by the ImgLib2-API. In addition several nodes are included to calculate image features (e.g. zernike-, texture- or histogram features) for segmented images (e.g. a single cell). These feature vectors can then be used to apply machine learning methods in order to train and apply a classifier. |
| 8 | +The KNIME Image Processing Extension adds new nodes to [KNIME Analytics Platform](https://knime.com) to, e.g. read more than 100 different kinds of images (thanks to the Bio-Formats library), apply well-known methods for preprocessing, image segmentation, and classification. Most of the included nodes operate on multi-dimensional image data (e.g. videos, 3D images, multi-channel images or even a combination of them), which is made possible by [ImgLib2](https://imagej.net/ImgLib2). In addition, several nodes to calculate image features (e.g. zernike-, texture- or histogram features) for segmented images (e.g. a single cell) are included. These feature vectors can be used to apply machine learning methods in order to train and apply a classifier. |
9 | 9 |
|
10 | | -The KNIME Image Processing Extension currently provides about 90 nodes for (pre)-processing, filtering, segmentation, feature extraction, various views, .... |
| 10 | +The KNIME Image Processing Extension currently provides about 90 nodes for (pre)processing, filtering, segmentation, feature extraction, various views, .... |
11 | 11 |
|
12 | 12 | For more information how to install/use KNIME Image Processing see: |
13 | | -http://tech.knime.org/community/image-processing |
| 13 | +https://www.knime.com/community/image-processing |
14 | 14 |
|
15 | 15 | Example Workflows can be found at: |
16 | | -http://tech.knime.org/community/image-processing#exampleworkflows |
| 16 | +https://hub.knime.com/knime/spaces/Examples/latest/99_Community/01_Image_Processing/ |
17 | 17 |
|
18 | | -KNIME Image Processing Webinar on YouTube (03/25/2014): |
19 | | -http://www.youtube.com/watch?v=MqSIyqmm3EU&feature=youtu.be&a |
| 18 | +# Package Organization |
20 | 19 |
|
21 | | -Package Organization |
22 | | -==== |
| 20 | +* `org.knime.knip.core`: Logic/Algorithms/DataStructures/Views independent of KNIME |
| 21 | +* `org.knime.knip.base`: KNIME Image Processing Nodes wrapping core and providing dedicated KNIME Image Processing functionality (NodeModels etc). |
| 22 | +* `org.knime.knip.feature`: Eclipse feature for org.knime.knip.core and org.knime.knip.base |
| 23 | +* `org.knime.knip.testing`: KNIME Image Processing Testing nodes, e.g. for regressions tests. |
| 24 | +* `org.knime.knip.testing.feature`: Eclipse feature for KNIME Image Processing Testings nodes. |
| 25 | +* `org.knime.knip.io`: Image Reader/Image Writer for KNIME Image Processing. |
| 26 | +* `org.knime.knip.update`: Eclipse update site for KNIME Image Processing and depedencies. |
| 27 | +* `org.knime.knip.tracking`: TrackMate Tracking integration. |
23 | 28 |
|
24 | | -* org.knime.knip.core: Logic/Algorithms/DataStructures/Views independent of KNIME |
25 | | -* org.knime.knip.base: KNIME Image Processing Nodes wrapping core and providing dedicated KNIME Image Processing functionality (NodeModels etc). |
26 | | -* org.knime.knip.feature: Eclipse feature for org.knime.knip.core and org.knime.knip.base |
27 | | -* org.knime.knip.testing: KNIME Image Processing Testing nodes, e.g. for regressions tests. |
28 | | -* org.knime.knip.testing.feature: Eclipse feature for KNIME Image Processing Testings nodes. |
29 | | -* org.knime.knip.io: Image Reader/Image Writer for KNIME Image Processing. |
30 | | -* org.knime.knip.update: Eclipse update site for KNIME Image Processing and depedencies. |
31 | | -* org.knime.knip.tracking: TrackMate Tracking integration. |
| 29 | +# For Developers |
32 | 30 |
|
33 | | -For Developers: |
34 | | -==== |
35 | 31 | See [this repository](https://github.com/knime-ip/knip-sdk-setup) for instructions. |
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