Failed IntelMPI E2E tests

[tenzen-y]

Intel MPI E2E tests failed in CI:

mpi-operator/test/e2e/mpi_job_test.go

Lines 207 to 272 in c738a83

	ginkgo.Context("with Intel Implementation", func() {
	ginkgo.BeforeEach(func() {
	mpiJob.Spec.MPIImplementation = kubeflow.MPIImplementationIntel
	mpiJob.Spec.MPIReplicaSpecs[kubeflow.MPIReplicaTypeLauncher].Template.Spec.Containers = []corev1.Container{
	{
	Name: "launcher",
	Image: intelMPIImage,
	ImagePullPolicy: corev1.PullIfNotPresent, // use locally built image.
	Command: []string{}, // uses entrypoint.
	Args: []string{
	"mpirun",
	"-n",
	"2",
	"/home/mpiuser/pi",
	},
	},
	}
	mpiJob.Spec.MPIReplicaSpecs[kubeflow.MPIReplicaTypeWorker].Template.Spec.Containers = []corev1.Container{
	{
	Name: "worker",
	Image: intelMPIImage,
	ImagePullPolicy: corev1.PullIfNotPresent, // use locally built image.
	Command: []string{}, // uses entrypoint.
	Args: []string{
	"/usr/sbin/sshd",
	"-De",
	},
	ReadinessProbe: &corev1.Probe{
	ProbeHandler: corev1.ProbeHandler{
	TCPSocket: &corev1.TCPSocketAction{
	Port: intstr.FromInt(2222),
	},
	},
	InitialDelaySeconds: 3,
	},
	},
	}
	})
	ginkgo.When("running as root", func() {
	ginkgo.It("should succeed", func() {
	mpiJob := createJobAndWaitForCompletion(mpiJob)
	expectConditionToBeTrue(mpiJob, kubeflow.JobSucceeded)
	})
	})
	ginkgo.When("running as non-root", func() {
	ginkgo.BeforeEach(func() {
	mpiJob.Spec.SSHAuthMountPath = "/home/mpiuser/.ssh"
	mpiJob.Spec.MPIReplicaSpecs[kubeflow.MPIReplicaTypeLauncher].Template.Spec.Containers[0].SecurityContext = &corev1.SecurityContext{
	RunAsUser: ptr.To[int64](1000),
	}
	workerContainer := &mpiJob.Spec.MPIReplicaSpecs[kubeflow.MPIReplicaTypeWorker].Template.Spec.Containers[0]
	workerContainer.SecurityContext = &corev1.SecurityContext{
	RunAsUser: ptr.To[int64](1000),
	}
	workerContainer.Args = append(workerContainer.Args, "-f", "/home/mpiuser/.sshd_config")
	})
	ginkgo.It("should succeed", func() {
	mpiJob := createJobAndWaitForCompletion(mpiJob)
	expectConditionToBeTrue(mpiJob, kubeflow.JobSucceeded)
	})
	})
	})

== BEGIN pi-launcher-jlll8 pod logs ==
 
:: initializing oneAPI environment ...
   entrypoint.sh: BASH_VERSION = 5.2.15(1)-release
   args: Using "$@" for setvars.sh arguments: mpirun -n 2 /home/mpiuser/pi
:: mpi -- latest
:: oneAPI environment initialized ::
 
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher... Retrying
Couldn't resolve pi-launcher
Resolved pi-worker-0.pi.e2e-89g8w.svc
Resolved pi-worker-1.pi.e2e-89g8w.svc
Rank 1 on host pi-worker-1
Workers: 2
Rank 0 on host pi-worker-0

== END pi-launcher-jlll8 pod logs ==
== BEGIN pi-worker-0 pod logs ==
 
:: initializing oneAPI environment ...
   entrypoint.sh: BASH_VERSION = 5.2.15(1)-release
   args: Using "$@" for setvars.sh arguments: /usr/sbin/sshd -De -f /home/mpiuser/.sshd_config
:: mpi -- latest
:: oneAPI environment initialized ::
 
Server listening on 0.0.0.0 port 2222.
Server listening on :: port 2222.
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 56026
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 36592
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 34520
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 37484
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 60796
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 35102
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 51398
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 43206
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 38376
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 46258
Accepted publickey for mpiuser from 10.244.0.26 port 36268 ssh2: ECDSA SHA256:CNZ8oQS0SYjcnyrsp2ZlAKHnT+8J+ZSTFENzWrT+9vQ
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 38498
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 37542
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 38298
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 44600
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 41802
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 52118
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 32934
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 54520
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 48770

== END pi-worker-0 pod logs ==
== BEGIN pi-worker-1 pod logs ==
 
:: initializing oneAPI environment ...
   entrypoint.sh: BASH_VERSION = 5.2.15(1)-release
   args: Using "$@" for setvars.sh arguments: /usr/sbin/sshd -De -f /home/mpiuser/.sshd_config
:: mpi -- latest
:: oneAPI environment initialized ::
 
Server listening on 0.0.0.0 port 2222.
Server listening on :: port 2222.
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 47954
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 58200
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 33168
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 42132
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 5[4286](https://github.com/kubeflow/mpi-operator/actions/runs/12369242697/job/34522856743?pr=673#step:4:4287)
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 56804
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 51658
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 56848
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 55746
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 55400
Accepted publickey for mpiuser from 10.244.0.26 port [4293](https://github.com/kubeflow/mpi-operator/actions/runs/12369242697/job/34522856743?pr=673#step:4:4294)0 ssh2: ECDSA SHA256:CNZ8oQS0SYjcnyrsp2ZlAKHnT+8J+ZSTFENzWrT+9vQ
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 37518
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 35264
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 57206
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 46430
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 40660
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 36338
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port [4307](https://github.com/kubeflow/mpi-operator/actions/runs/12369242697/job/34522856743?pr=673#step:4:4308)4
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 53162
kex_exchange_identification: Connection closed by remote host
Connection closed by 10.244.0.1 port 47790

== END pi-worker-1 pod logs ==

[...]

Summarizing 2 Failures:

[Fail] MPIJob with Intel Implementation when running as root [It] should succeed 
/home/runner/work/mpi-operator/mpi-operator/test/e2e/mpi_job_test.go:571

[Fail] MPIJob with Intel Implementation when running as non-root [It] should succeed 
/home/runner/work/mpi-operator/mpi-operator/test/e2e/mpi_job_test.go:571

Ran 13 of 13 Specs in 836.549 seconds
FAIL! -- 11 Passed | 2 Failed | 0 Pending | 0 Skipped
--- FAIL: TestE2E (836.55s)
FAIL
FAIL	github.com/kubeflow/mpi-operator/test/e2e	836.571s
FAIL

We have seen this problem in the following:

• Fix crash in podgroup when runLauncherAsWorker is true #669
• Do not create the launcher job if the job starts suspended #670
• DO NOT MERGE: E2E CI CHECK #671
• chore: bump golang.org/x/crypto from v0.26.0 to v0.31.0 #673

[tenzen-y]

cc: @alculquicondor

[tenzen-y]

/kind flake
/kind bug

If anyone has a solution, feel free to submit a PR.

[google-oss-prow]

@tenzen-y: The label(s) kind/flake cannot be applied, because the repository doesn't have them.

Details

In response to this:

/kind flake
/kind bug

If anyone has a solution, feel free to submit a PR.

Instructions for interacting with me using PR comments are available here. If you have questions or suggestions related to my behavior, please file an issue against the kubernetes/test-infra repository.

[tenzen-y]

In my investigation, it seems that even the v0.4.0 intel-pi image has the same problem.

[alculquicondor]

Are you saying that this is failing with released images too?
In that case, it's likely an issue with a new version of IntelMPI, as we don't lock the version in the Dockerfiles https://github.com/kubeflow/mpi-operator/blob/master/build/base/intel.Dockerfile

[tenzen-y]

Are you saying that this is failing with released images too?

Yes.

In that case, it's likely an issue with a new version of IntelMPI, as we don't lock the version in the Dockerfiles https://github.com/kubeflow/mpi-operator/blob/master/build/base/intel.Dockerfile

I'm not sure that the root cause is latest Intel MPI since our E2E testing does not use the latest pi image:

mpi-operator/test/e2e/e2e_suite_test.go

Line 52 in c738a83

defaultIntelMPIImage = "mpioperator/mpi-pi:intel"

Note that mpioperator/mpi-pi:intel was updated in the release with 0.6.0 for the first time in 2 years.

The building image name during E2E testing is mpioperator/mpi-pi:test-intel as shown

mpi-operator/Makefile

Line 75 in c738a83

test_e2e: export TEST_INTELMPI_IMAGE=${REGISTRY}/mpi-pi:${RELEASE_VERSION}-intel

After I found this problem, I tried to fix the E2E image so that we could use the latest build image like bce83b6. But I keep facing the same errors...

[tenzen-y]

Note that this failure happens only in GitHub actions. In my local and other developer environments, E2E succeeded.

#669 (comment)

[tenzen-y]

Currently, I'm doubting the Pod-to-Pod communication compatibility between Kind and GH actions

[tenzen-y]

After I switched to MInikube in CI, I faced the same errors again: 005e72f

So, the root cause seems to be different.

[GonzaloSaez]

#676 seems to fix the issue