From 9430a96575716307f613e679b6e11797bc64b79e Mon Sep 17 00:00:00 2001 From: Jeremy Muhlich Date: Tue, 8 Oct 2024 11:26:04 -0400 Subject: [PATCH 1/2] Update coreograph to 2.3.0 * Fixes segfault on large images --- config/defaults.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/defaults.yml b/config/defaults.yml index 70fe72d2..6bbebb1a 100644 --- a/config/defaults.yml +++ b/config/defaults.yml @@ -33,7 +33,7 @@ modules: dearray: name: coreograph container: labsyspharm/unetcoreograph - version: 2.2.9 + version: 2.3.0 cmd: python /app/UNetCoreograph.py --outputPath . input: --imagePath staging: From 728264673efbe86f739fa62462a70512ba5513b3 Mon Sep 17 00:00:00 2001 From: Artem Sokolov Date: Wed, 9 Oct 2024 00:06:29 +0000 Subject: [PATCH 2/2] Version bump to actions/upload-artifact --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 6077bb7f..4b5f9000 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -111,7 +111,7 @@ jobs: ./nextflow main.nf --in ~/data/exemplar-001 ${{ matrix.params }} ls -R ~/data/exemplar-001 - name: Upload processed result - uses: actions/upload-artifact@v2 + uses: actions/upload-artifact@v4 if: ${{ github.event_name == 'push' && contains(matrix.params, 'viz') }} with: name: exemplar-001