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diff --git a/‎examples/HIVdynamics_aMCMC/README.txt‎
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diff --git a/‎examples/HIVdynamics_aMCMC/pt303.bngl‎ ‎…mples/HIVdynamics_aMCMC/pt303/pt303.bngl‎examples/HIVdynamics_aMCMC/pt303.bngl renamed to examples/HIVdynamics_aMCMC/pt303/pt303.bngl b/‎examples/HIVdynamics_aMCMC/pt303.bngl‎ ‎…mples/HIVdynamics_aMCMC/pt303/pt303.bngl‎examples/HIVdynamics_aMCMC/pt303.bngl renamed to examples/HIVdynamics_aMCMC/pt303/pt303.bngl
diff --git a/‎examples/HIVdynamics_aMCMC/pt303.conf‎ ‎…mples/HIVdynamics_aMCMC/pt303/pt303.conf‎examples/HIVdynamics_aMCMC/pt303.conf renamed to examples/HIVdynamics_aMCMC/pt303/pt303.conf b/‎examples/HIVdynamics_aMCMC/pt303.conf‎ ‎…mples/HIVdynamics_aMCMC/pt303/pt303.conf‎examples/HIVdynamics_aMCMC/pt303.conf renamed to examples/HIVdynamics_aMCMC/pt303/pt303.conf
diff --git a/‎examples/HIVdynamics_aMCMC/pt303.exp‎ ‎…amples/HIVdynamics_aMCMC/pt303/pt303.exp‎examples/HIVdynamics_aMCMC/pt303.exp renamed to examples/HIVdynamics_aMCMC/pt303/pt303.exp b/‎examples/HIVdynamics_aMCMC/pt303.exp‎ ‎…amples/HIVdynamics_aMCMC/pt303/pt303.exp‎examples/HIVdynamics_aMCMC/pt303.exp renamed to examples/HIVdynamics_aMCMC/pt303/pt303.exp
diff --git a/‎examples/HIVdynamics_aMCMC/pt303.sh‎ ‎examples/HIVdynamics_aMCMC/pt303/pt303.sh‎examples/HIVdynamics_aMCMC/pt303.sh renamed to examples/HIVdynamics_aMCMC/pt303/pt303.sh b/‎examples/HIVdynamics_aMCMC/pt303.sh‎ ‎examples/HIVdynamics_aMCMC/pt303/pt303.sh‎examples/HIVdynamics_aMCMC/pt303.sh renamed to examples/HIVdynamics_aMCMC/pt303/pt303.sh
diff --git a/‎…303_output/adaptive_files/MLE_params.txt‎ ‎…303_output/adaptive_files/MLE_params.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/MLE_params.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/MLE_params.txt b/‎…303_output/adaptive_files/MLE_params.txt‎ ‎…303_output/adaptive_files/MLE_params.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/MLE_params.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/MLE_params.txt
diff --git a/‎…CMC/pt303_output/adaptive_files/diff.txt‎ ‎…303/pt303_output/adaptive_files/diff.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/diff.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/diff.txt b/‎…CMC/pt303_output/adaptive_files/diff.txt‎ ‎…303/pt303_output/adaptive_files/diff.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/diff.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/diff.txt
diff --git a/‎…303_output/adaptive_files/diffMatrix.txt‎ ‎…303_output/adaptive_files/diffMatrix.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/diffMatrix.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/diffMatrix.txt b/‎…303_output/adaptive_files/diffMatrix.txt‎ ‎…303_output/adaptive_files/diffMatrix.txt‎examples/HIVdynamics_aMCMC/pt303_output/adaptive_files/diffMatrix.txt renamed to examples/HIVdynamics_aMCMC/pt303/pt303_output/adaptive_files/diffMatrix.txt
diff --git a/‎examples/HIVdynamics_aMCMC/pt403.bngl‎ ‎…mples/HIVdynamics_aMCMC/pt403/pt403.bngl‎examples/HIVdynamics_aMCMC/pt403.bngl renamed to examples/HIVdynamics_aMCMC/pt403/pt403.bngl b/‎examples/HIVdynamics_aMCMC/pt403.bngl‎ ‎…mples/HIVdynamics_aMCMC/pt403/pt403.bngl‎examples/HIVdynamics_aMCMC/pt403.bngl renamed to examples/HIVdynamics_aMCMC/pt403/pt403.bngl
diff --git a/‎examples/HIVdynamics_aMCMC/pt403.conf‎ ‎…mples/HIVdynamics_aMCMC/pt403/pt403.conf‎examples/HIVdynamics_aMCMC/pt403.conf renamed to examples/HIVdynamics_aMCMC/pt403/pt403.conf b/‎examples/HIVdynamics_aMCMC/pt403.conf‎ ‎…mples/HIVdynamics_aMCMC/pt403/pt403.conf‎examples/HIVdynamics_aMCMC/pt403.conf renamed to examples/HIVdynamics_aMCMC/pt403/pt403.conf
@@ -1,5 +1,5 @@
 A model parameterization of the two-phase exponential decay model for viral dynamics under therapy 
-generated from published models (1,2).
+generated from the following publications (1,2).
 
 The first run was done for 100000 iterations to find a suitable covariance matrix and to find convergence. 
 The Warm start following was ran for 200000 total iterations and was able to properly sample the posterior distribution.