README

Iedera is a subset seed/vectorized subset seed design tool, that
allows to design spaced seeds, transition spaced seeds, and vector
seeds devoted to DNA and protein similarity search. This command line
tool is implemented in C++ and provided for research purposes only.

Help on this program can be obtained with the --help (-h) parameter,
or from the homepage :
  http://bioinfo.univ-lille.fr/yass/iedera.php

Several specific examples and papers are also provided on this
webpage, depending on the specific usage you would need.

The original paper for the framework of this tool is [G. Kucherov,
L. Noe, M. Roytberg,  A unifying framework for seed sensitivity and
its application to subset seeds. Journal of Bioinformatics and
Computational Biology, 2006]