Skip to content

use fasterq-dump #409

@daler

Description

@daler

fastq-dump has been on its way out for a while, but fasterq-dump is the replacement and we should figure out how to support it.

Lots of hints on the NIH Biowulf help page for sratoolkit. Looks like temp space will be important to have (and need to somehow calculate space needed for it); may also need to convert quality headers as documented on that page.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions