Skip to content

Configure functional enrichment to work with GSEA #424

@b-full

Description

@b-full

In lib/lcdbwf/R/functional-enrichment.R, enrich_test() at line 127 has "OR" (Over Representation Analysis) hardcoded as a default parameter and in fact never uses the value assigned in the config.yaml file. We want to be able to use "GSEA"(Gene Set Enrichment Analysis) as well by assigning it in config.yaml, but it seems setting kind=GSEA currently throws an error. We need to configure this to work with both kind=OR as well as kind=GSEA.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions