Skip to content

README.md

Latest commit

 

History

History
20 lines (14 loc) · 676 Bytes

README.md

File metadata and controls

20 lines (14 loc) · 676 Bytes

SNAP

SNP annotation recovery tool

A python framework to read in VCF files and a given Genbank genome and parse out the genes the SNPs occur in, and what if any changes in translation occur.

Current Goals

  • Goal 1: Read in genome from Genbank
  • Goal 2: Find all CDS, and the sequence / translation.
  • Goal 3: Find the position of each SNP in CDS.
  • Goal 4: Build replace the SNP base and get new translation.
  • Goal 5: Identify what changes in amino acids occur if any.

Credit

Lyndon Coghill
Felix Grewe