dataRetrieval/.gitlab-ci.yml at main · ldecicco-USGS/dataRetrieval · GitHub

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workflow:
  rules:
    - if: $CI_COMMIT_TAG
    - if: $CI_COMMIT_BRANCH

default:
  tags:
    - chs-shared

stages:
  - build-package
  - build
  - check
  - test
  - end
  - deploy

variables:
  _R_CHECK_CRAN_INCOMING_: "false"
  _R_CHECK_SUGGESTS_ONLY: "false"
  _R_CHECK_FORCE_SUGGESTS_: "true"
  _R_CHECK_DONTTEST_EXAMPLES_: "false"
  R_PROFILE: "$R_HOME/etc/Rprofile.site"
  R_LIBS_USER: "$CI_PROJECT_DIR/ci/lib"
  APT_CACHE: "$CI_PROJECT_DIR/ci/lib/apt-cache"
  CRAN: "https://rpkg.chs.usgs.gov/prod-cran/latest"
  R_LIBS: "$CI_PROJECT_DIR/ci/lib"
  BUILD_LOGS_DIR: "$CI_PROJECT_DIR/ci/logs"
  NOT_CRAN: "true"
  PAGES_OUTDIR: "$CI_PROJECT_DIR/public"
  CUSTOM_DR_UA: "GitLab_CI"
  API_USGS_PAT: "${API_USGS_PAT}"

build-package:
  stage: build-package
  image: ${CI_REGISTRY_IMAGE}:latest
  script:
    - set -euo pipefail
    - R CMD build .
  artifacts:
    paths:
      - "*.tar.gz"
    expire_in: 1 day

build-image:
  stage: build
  cache: []
  tags:
    - chs-shared
    - dind
  image: ${DEVOPS_REGISTRY}usgs/docker:29
  services:
  - name: ${DEVOPS_REGISTRY}usgs/docker:29-dind
    alias: docker
  script:
    - echo "${CI_REGISTRY_PASSWORD}" | docker login -u "${CI_REGISTRY_USER}" --password-stdin $CI_REGISTRY
    - docker pull ${CI_REGISTRY_IMAGE}:latest || true
    - docker build --cache-from ${CI_REGISTRY_IMAGE}:latest -t ${CI_REGISTRY_IMAGE}:latest -t ${CI_REGISTRY_IMAGE}:BUILD_${CI_COMMIT_SHORT_SHA} -f docker/Dockerfile .
    # If this is building a git tag, also push the corresponding docker tag
    - if [ -n "${CI_COMMIT_TAG}" ]; then docker tag "${CI_REGISTRY_IMAGE}:BUILD_${CI_COMMIT_SHORT_SHA}" "${CI_REGISTRY_IMAGE}:${CI_COMMIT_TAG}"; fi
    - docker push --all-tags ${CI_REGISTRY_IMAGE}


buildcheck:
  image: ${CI_REGISTRY_IMAGE}:latest
  stage: check
  cache: []
  dependencies:
    - build-image
  script:
    - |
      Rscript -e "
        rcmdcheck::rcmdcheck(
          args = c('--no-manual', '--no-tests'),
          build_args = c('--no-manual', '--no-resave-data'),
          check_dir = '.',
          error_on = 'warning'
        )
      "
  artifacts:
    paths:
      - "*.tar.gz"
    expire_in: 1 hour

# unittests:
#   stage: test
#   cache: []
#   image: ${CI_REGISTRY_IMAGE}:latest
#   dependencies:
#     - build-image
#     - buildcheck
#   script:
#     - |
#       Rscript -e '
#         library(testthat)
#         options(testthat.output_file = file.path(Sys.getenv("CI_PROJECT_DIR"), "test-out.xml"))
#         test_local(reporter = "junit")'
#     - |
#       Rscript -e '
#         x <- covr::package_coverage()
#         covr::to_cobertura(x)
#         x'
#   artifacts:
#     when: always
#     expire_in: 1 hour
#     paths:
#       - test-out.xml
#     reports:
#       junit: test-out.xml
#       coverage_report:
#         coverage_format: cobertura
#         path: cobertura.xml
#   coverage: '/Coverage: \d+.\d+\%/'

longtest:
  stage: test
  image: ${CI_REGISTRY_IMAGE}:latest
  dependencies:
    - build-image
    - buildcheck
  script:
    - |
      Rscript -e '
        testthat::test_local(path = "tests/manual")'
  rules:
    - if: $RUN_LONG_TESTS == "FALSE"
      when: always
    - when: never
  artifacts:
    expire_in: 5 minutes

pages:
  image: ${CI_REGISTRY_IMAGE}:latest
  stage: end
  dependencies:
    - build-image
    - buildcheck
  variables:
    RETICULATE_PYTHON: /usr/bin/python3
  script:
    - |
      Rscript -e '
        pkgdown::build_site(override = list(destination = "public"))
        file.copy(from = "./public/articles/logo.png", to = "./public/reference/logo.png")'
    - quarto render
  artifacts:
    paths:
      - $PAGES_OUTDIR
    expire_in: 1 hour

Validate Inventory:
  stage: end
  only:
    - main
  image: ${INTERNAL_REGISTRY}software/software-management:latest
  script:
    - software-management review
      --project "${CI_PROJECT_PATH}"
      --ref "${CI_COMMIT_BRANCH}"
      --type "provisional"
      --token "${GIT_TOKEN_CUSTOM}"
  tags:
      - chs-shared
  artifacts:
    expire_in: 5 minutes