v0.1.2

What's Changed

New features

• SNP/indel annotation (hg38 only)

Bug fixes

• Fixes #8
• Fixed #7

Other changes

• Implement deepvariant directly (ie. remove the parabricks layer)
• Tag snp/indel caller, sv caller and mapper/phaser in filename at publish and remove some semi-duplicate rules
• Remove un-needed output files (gvcf file and sniffles snf file)
• Convert from programmatically reporting software versions to reporting software versions (and now variant database versions) in a single file in the documentation. Each version of pipeface will report the exact software/database versions used in the pipeline, assuming the default nextflow_pipeface.config file is used.
• Addition of the description of the niche pipeface fills
• Credit to collaborators
• Fixing the rendering of new lines in the mermaid diagrams
• More walltime for minimap2 and clair3
• Other minor changes to documentation

Full breakdown

• Release v0.1.2 by @leahkemp in #13
• Full Changelog: v0.1.1...v0.1.2

v0.1.1

What's Changed

Overview

• Extend checks on user input's for in_data.csv file
• Lighten the disk usage of minimap2 by removing the need for the samtools addreplacerg step
• Increase the walltime for the merge_runs process
• Fix bug in reported SV caller when a single SV caller is selected
• Minor changes to code comments

Full breakdown

• Release v0.1.1 by @leahkemp in #6
• Full Changelog: v0.1.0...v0.1.1

v0.1.0 - first release!

more rsources for cutesv