HEAD request failed for url http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.txt

[nicolaygerold]

Error executing job with overrides: ['e1=CMTM6', 'e2=CD274', 'type=protein_protein', 'out=./PEDL_extractions']
Traceback (most recent call last):
File "/Users/nicolay/dev/quick/.venv/lib/python3.12/site-packages/pedl/predict.py", line 41, in predict
head_id_to_entity = ID_MAPPINGcfg.type.head_type
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/nicolay/dev/quick/.venv/lib/python3.12/site-packages/pedl/utils.py", line 486, in get_hgnc_symbol_to_gene_id
with open(cached_path(url, cache_dir=cache_root), encoding="utf8") as f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/nicolay/dev/quick/.venv/lib/python3.12/site-packages/pedl/utils.py", line 242, in cached_path
return get_from_cache(url_or_filename, dataset_cache)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/nicolay/dev/quick/.venv/lib/python3.12/site-packages/pedl/utils.py", line 195, in get_from_cache
raise IOError(
OSError: HEAD request failed for url http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.txt with status code 404.

Set the environment variable HYDRA_FULL_ERROR=1 for a complete stack trace.

I was trying it out and finding this issue. Can you help me out here?

[Jigyasa3]

hi @nicolaygerold ,

Have a look at the nf-core/rnafusion#506. You can change the file to "https://ftp.ebi.ac.uk/pub/databases/genenames/out_of_date_hgnc/tsv/hgnc_complete_set.txt" in the utils.py file.

Hope it helps!
Jigyasa