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continuum_template.yaml
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3352 lines (3347 loc) · 158 KB
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tosca_definitions_version: alien_dsl_3_0_0
metadata:
template_name: org.lexis.wp7.ContinuumTemplate
template_version: 0.1.0-SNAPSHOT
template_author: lexis
description: Continuum template
imports:
- yorc-types:1.1.0
- yorc-openstack-types:3.1.0
- tosca-normative-types:1.0.0-ALIEN20
- docker-types:3.0.0
- alien-base-types:3.0.0
- org.lexis.common.ddi-types:1.0.4
- org.lexis.common.heappe-types:1.0.8
- org.lexis.common.dynamic-orchestration-types:1.0.4
- org.ystia.docker.containers.docker.generic:3.0.1-SNAPSHOT
- org.ystia.docker.ansible:3.0.0-SNAPSHOT
- org.lexis.common.datatransfer:0.1.8-SNAPSHOT
- org.lexis.wp7.wps:0.1.5-SNAPSHOT
- org.lexis.wp7.dewetra:0.1.0
topology_template:
inputs:
token:
type: string
required: true
description: "OpenID Connect token"
project_id:
type: string
description: "LEXIS project identifier"
required: true
preprocessing_start_date:
type: string
description: Start date of the simulation, format YYYYMMDDHH
required: true
postprocessing_run_date:
type: string
description: Continuum run date, format YYYY-MM-DD HH:MM
required: true
preprocessing_docker_image_gfs:
type: string
description: Pre-processing container repository path
default: "cimafoundation/wps-da.gfs:v2.0.3"
required: false
preprocessing_docker_image_observation_data:
type: string
description: Repository path of container downloading observation data
default: "cimafoundation/lexis-download-docker:v1.2.5"
required: false
preprocessing_dataset_path_geographical_data_path:
type: string
description: Dataset containing geographical data
default: project/proj2bdfd9ccf5a78c3ec68ee9e1d90d2c1c/055b25ea-ba60-11eb-a44e-0050568fc9b5/static_geog_data.tar.gz
#default: "project/proj2bdfd9ccf5a78c3ec68ee9e1d90d2c1c/69c0f740-33f0-11eb-8f85-0050568fcecc"
required: false
preprocessing_decrypt_dataset_geographical_data:
type: boolean
description: Should the input dataset be decrypted
default: false
required: false
preprocessing_uncompress_dataset_geographical_data:
type: boolean
description: Should the input dataset be uncompressed
default: true
required: false
preprocessing_volumes:
type: list
entry_schema:
type: string
description: |
List of volumes to mount within the pre-processing container.
Use docker CLI-style syntax: /host:/container[:mode]
default: ["/wps_data/gfs:/input", "/wps_data/output/inputs:/output", "/mnt/cloud_staging_area/continuum:/geogrid"]
preprocessing_observation_data_volumes:
type: list
entry_schema:
type: string
description: |
List of volumes to mount within the post-processing container downloading observation data.
Use docker CLI-style syntax: /host:/container[:mode]
default: ["/wps_data/observations:/output"]
computation_heappe_command_template_name:
type: string
description: HEAppE Command Template Name
required: false
default: "WRF Generic"
computation_email_for_HEAppE_notifications:
type: string
description: E-mail where to receive notifications from HEAppE about the computation job (default, no email)
required: false
default: ""
postprocessing_dewetra_sftp_server_ip:
type: string
description: IP address of a Dewetra SPTP server where to store results (default, no sftp server upload)
required: false
default: ""
postprocessing_dataset_continuum_static_data_path:
type: string
description: Continuum static data dataset path in DDI
default: "project/proj2bdfd9ccf5a78c3ec68ee9e1d90d2c1c/7eb5e3ee-446d-11eb-8958-0050568fcecc"
required: false
postprocessing_dataset_continuum_hmc_initial_conditions_data_path:
type: string
description: Continuum HMC initial conditions dataset path in DDI
default: "project/proj2bdfd9ccf5a78c3ec68ee9e1d90d2c1c/89ea8360-40a6-11ec-bb9c-0050568fcecc"
required: false
postprocessing_hyde_image:
type: string
description: Hyde post-processing container repository path
default: "laurentg/fp_framework_hyde:1.0.5"
postprocessing_hmc_image:
type: string
description: HMC post-processing container repository path
default: "laurentg/fp_framework_hmc:1.0.7"
postprocessing_ddi_project_path:
type: string
description: "Path where to transfer the post-processing results in DDI"
default: "project/proj2bdfd9ccf5a78c3ec68ee9e1d90d2c1c"
required: false
postprocessing_encrypt_dataset_result:
type: boolean
description: Encrypt the result dataset
default: false
required: false
postprocessing_compress_dataset_result:
type: boolean
description: Compress the result dataset
default: true
required: false
node_templates:
# Validation of the token provided in input
# Exchanging this token to have an access and refresh tokens
# for any component needing it in the workflow
ValidateExchangeToken:
type: org.lexis.common.dynamic.orchestration.nodes.ValidateAndExchangeToken
properties:
token: {get_input: token}
project_id: { get_input: project_id }
# Job gathering info on the input dataset:
# - on which locations it is available
# - size
# - number of files
# to take placement decisions on computing resources using this dataset
InputDatasetInfoJob:
type: org.lexis.common.ddi.nodes.GetDDIDatasetInfoJob
properties:
token: {get_input: token}
dataset_path: {get_input: preprocessing_dataset_path_geographical_data_path}
# Find the best cloud location depending on the input dataset and needed cloud resources
FindCloudLocationJob:
type: org.lexis.common.dynamic.orchestration.nodes.SetLocationsJob
metadata:
task: dynamic_orchestration
properties:
token: { get_input: token }
project_id: { get_input: project_id }
requirements:
- InputDataset:
type_requirement: input_dataset
node: InputDatasetInfoJob
capability: org.lexis.common.ddi.capabilities.DatasetInfo
relationship: org.lexis.common.dynamic.orchestration.relationships.Dataset
- CloudResourceVM:
type_requirement: cloud_instance
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.dynamic.orchestration.relationships.CloudResource
# Floating IP address network
PublicNet:
type: yorc.nodes.openstack.FloatingIP
ContinuumVM:
type: tosca.nodes.Compute
requirements:
- networkPublicNetConnection:
type_requirement: network
node: PublicNet
capability: tosca.capabilities.Connectivity
relationship: tosca.relationships.Network
capabilities:
host:
properties:
num_cpus: 10
disk_size: "150 GB"
os:
properties:
type: linux
distribution: ubuntu
scalable:
properties:
min_instances: 1
max_instances: 1
default_instances: 1
endpoint:
properties:
secure: true
protocol: tcp
network_name: PRIVATE
initiator: source
# At the end of the workflow, the Cloud instance token should be refreshed
# before attempting to uninstall the compute instance
RefreshVMToken:
type: org.lexis.common.dynamic.orchestration.nodes.RefreshTargetTokens
requirements:
- target:
type_requirement: target
node: ContinuumVM
capability: tosca.capabilities.Node
relationship: tosca.relationships.DependsOn
GetDDIAccess:
type: org.lexis.common.ddi.nodes.DDIAccess
requirements:
- hostedOnComputeHost:
type_requirement: os
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.ddi.relationships.SameSite
DDIToCloudGEOGDatasetJob:
type: org.lexis.common.ddi.nodes.DDIToCloudJob
properties:
token: { get_input: token }
decrypt: {get_input: preprocessing_decrypt_dataset_geographical_data}
uncompress: {get_input: preprocessing_uncompress_dataset_geographical_data}
ddi_dataset_path: { get_input: preprocessing_dataset_path_geographical_data_path }
cloud_staging_area_directory_path: "continuum_preprocessing_geog"
timestamp_cloud_staging_area_directory: true
requirements:
- sameSite:
type_requirement: os
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.ddi.relationships.SameSite
MountGEOGDataset:
type: org.lexis.common.ddi.nodes.SSHFSMountStagingAreaDataset
properties:
token: { get_input: token }
mount_point_directory: "/mnt/cloud_staging_area/continuum"
requirements:
- ddi_access:
type_requirement: ddi_access
node: GetDDIAccess
capability: org.lexis.common.ddi.capabilities.DDIAccess
relationship: org.lexis.common.ddi.relationships.DDIAccessProvider
- data_transfer:
type_requirement: data_transfer
node: DDIToCloudGEOGDatasetJob
capability: org.lexis.common.ddi.capabilities.DataTransferCloud
relationship: org.lexis.common.ddi.relationships.CloudAreaDatasetProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
CreatePreProcessDirs:
type: org.lexis.common.datatransfer.nodes.CreateDirectories
properties:
directories: ["/wps_data/gfs", "/wps_data/output/inputs", "/wps_data/observations", "/wps_data/output/observations"]
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
Docker:
type: org.ystia.docker.ansible.nodes.Docker
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
WPS_GFS:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: preprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: preprocessing_docker_image_gfs}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
shm_size: "64 GB"
volumes: {get_input: preprocessing_volumes}
docker_env_vars: {concat: ["{\"WPS_START_DATE\": \"", get_input: preprocessing_start_date, "\", \"WPS_END_DATE\": \"", get_input: preprocessing_start_date, "\", \"WPS_MODE\": \"WRFDA\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
capabilities:
scalable:
properties:
min_instances: 1
max_instances: 1
default_instances: 1
# Get GFS data
GFSData:
type: org.lexis.wp7.nodes.GFSData
properties:
start_date: {get_input: preprocessing_start_date}
end_date: {get_input: preprocessing_start_date}
past_day_number: 0
with_data_assimilation: true
left_longitude: "-19.0"
right_longitude: "48.0"
top_latitude: "64.0"
bottom_latitude: "24.0"
output_directory: "/wps_data/gfs"
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Download observation data needed by Continuum
ObservationsData:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: preprocessing_docker_image_observation_data}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
shm_size: "64 GB"
volumes: {get_input: preprocessing_observation_data_volumes}
docker_env_vars: {concat: ["{\"START_DATE\": \"", get_input: preprocessing_start_date, "\", \"DOWNLOAD_TYPE\": \"CONTINUUM\", \"WEBDROPS_USER\": \"", get_secret: ["/secret/wp7/webdrops/creds", "data=user"], "\", \"WEBDROPS_PWD\": \"", get_secret: ["/secret/wp7/webdrops/creds", "data=password"], "\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
capabilities:
scalable:
properties:
min_instances: 1
max_instances: 1
default_instances: 1
# Move results to match WRF inputs structure expectations
MoveObservationData:
type: org.lexis.common.datatransfer.nodes.MoveFile
properties:
source_file: "/wps_data/observations/WRFDA/*"
destination: "/wps_data/output/observations"
as_user: "root"
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Get pre-processing results details (size, number of files)
GetPreprocessDatasetInfo:
type: org.lexis.common.ddi.nodes.GetComputeInstanceDatasetInfo
properties:
dataset_path: "/wps_data/output"
requirements:
- host:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Find the best HPC location depending on the input dataset and needed HPC resources
FindHPCLocationsJob:
type: org.lexis.common.dynamic.orchestration.nodes.SetLocationsJob
metadata:
task: dynamic_orchestration
properties:
token: { get_input: token }
project_id: { get_input: project_id }
requirements:
- InputDataset:
type_requirement: input_dataset
node: GetPreprocessDatasetInfo
capability: org.lexis.common.ddi.capabilities.DatasetInfo
relationship: org.lexis.common.dynamic.orchestration.relationships.Dataset
- HPCResourceWRFJob:
type_requirement: heappe_job
node: WRF
capability: org.lexis.common.heappe.capabilities.HeappeJob
relationship: org.lexis.common.dynamic.orchestration.relationships.HeappeJob
WRF:
type: org.lexis.common.heappe.nodes.Job
metadata:
task: computation
properties:
token: { get_input: token }
JobSpecification: {concat: ["{\"Name\":\"WRFJob\",\"Project\":\"MyProject\",\"ClusterId\":\"2\",\"NotificationEmail\":\"", get_input: computation_email_for_HEAppE_notifications ,"\",\"NotifyOnAbort\":\"true\",\"NotifyOnFinish\":\"true\",\"NotifyOnStart\":\"true\",\"Tasks\":[{\"Name\":\"", get_input: computation_heappe_command_template_name ,"\",\"MinCores\":\"512\",\"MaxCores\":\"512\",\"WalltimeLimit\":\"27000\",\"Priority\":\"4\",\"StandardOutputFile\":\"stdout\",\"StandardErrorFile\":\"stderr\",\"ProgressFile\":\"stdprog\",\"LogFile\":\"stdlog\",\"ClusterNodeTypeId\":\"1\",\"CommandTemplateId\":\"1\"}]}"]}
# Create a directory in staging area for WRF inputs
CreateStagingAreaWRFInputDir:
type: org.lexis.common.datatransfer.nodes.CreateStagingAreaDirectory
properties:
directory: "continuum_wrf_inputs"
requirements:
- mountedCloudStagingArea:
type_requirement: mounted_staging_area
node: MountGEOGDataset
capability: org.lexis.common.ddi.capabilities.MountedStagingAreaAccess
relationship: org.lexis.common.datatransfer.relationships.MountedCloudStagingArea
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
StageWRFInputs:
type: org.lexis.common.datatransfer.nodes.CopyToStagingAreaDirectory
properties:
source_directory: "/wps_data/output/"
requirements:
- staging_area_directory:
type_requirement: cloud_area_directory_provider
node: CreateStagingAreaWRFInputDir
capability: org.lexis.common.ddi.capabilities.CloudAreaDirectoryProvider
relationship: org.lexis.common.ddi.relationships.CloudAreaDirectoryProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Transfer these inputs to WRF
CloudToHPCTaskJob:
type: org.lexis.common.ddi.nodes.CloudToHPCJob
properties:
token: { get_input: token }
task_name: { get_input: computation_heappe_command_template_name }
requirements:
- cloud_area_directory_provider:
type_requirement: cloud_area_directory_provider
node: CreateStagingAreaWRFInputDir
capability: org.lexis.common.ddi.capabilities.CloudAreaDirectoryProvider
relationship: org.lexis.common.ddi.relationships.CloudAreaDirectoryProvider
- job:
type_requirement: job
node: WRF
capability: org.lexis.common.heappe.capabilities.HeappeJob
relationship: org.lexis.common.heappe.relationships.SendInputsToJob
CreatePostProcessHydeDirs:
type: org.lexis.common.datatransfer.nodes.CreateDirectories
properties:
directories:
- /continuum/datasets_hyde/static_data
- /continuum/datasets_hyde/dynamic_data
- /continuum/datasets_hyde/docker_data/marche
- /continuum/datasets_hyde/docker_data/liguria
- /continuum/datasets_hyde/docker_data/adige
- /continuum/datasets_hyde/docker_data/basilicata
- /continuum/datasets_hyde/docker_data/calabria
- /continuum/datasets_hyde/docker_data/fvg
- /continuum/datasets_hyde/docker_data/gargano
- /continuum/datasets_hyde/docker_data/lazio
- /continuum/datasets_hyde/docker_data/liri
- /continuum/datasets_hyde/docker_data/po
- /continuum/datasets_hyde/docker_data/puglia
- /continuum/datasets_hyde/docker_data/romagna
- /continuum/datasets_hyde/docker_data/sardegna
- /continuum/datasets_hyde/docker_data/sicilia
- /continuum/datasets_hyde/docker_data/tevere
- /continuum/datasets_hyde/docker_data/toscana
- /continuum/datasets_hyde/docker_data/volturno
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
CreatePostProcessHMCDirs:
type: org.lexis.common.datatransfer.nodes.CreateDirectories
properties:
directories:
- /continuum/datasets_hmc/dynamic_data/restart/marche
- /continuum/datasets_hmc/dynamic_data/source/marche
- /continuum/datasets_hmc/dynamic_data/destination/marche
- /continuum/datasets_hmc/dynamic_data/restart/liguria
- /continuum/datasets_hmc/dynamic_data/source/liguria
- /continuum/datasets_hmc/dynamic_data/destination/liguria
- /continuum/datasets_hmc/dynamic_data/restart/adige
- /continuum/datasets_hmc/dynamic_data/source/adige
- /continuum/datasets_hmc/dynamic_data/destination/adige
- /continuum/datasets_hmc/dynamic_data/restart/basilicata
- /continuum/datasets_hmc/dynamic_data/source/basilicata
- /continuum/datasets_hmc/dynamic_data/destination/basilicata
- /continuum/datasets_hmc/dynamic_data/restart/calabria
- /continuum/datasets_hmc/dynamic_data/source/calabria
- /continuum/datasets_hmc/dynamic_data/destination/calabria
- /continuum/datasets_hmc/dynamic_data/restart/fvg
- /continuum/datasets_hmc/dynamic_data/source/fvg
- /continuum/datasets_hmc/dynamic_data/destination/fvg
- /continuum/datasets_hmc/dynamic_data/restart/gargano
- /continuum/datasets_hmc/dynamic_data/source/gargano
- /continuum/datasets_hmc/dynamic_data/destination/gargano
- /continuum/datasets_hmc/dynamic_data/restart/lazio
- /continuum/datasets_hmc/dynamic_data/source/lazio
- /continuum/datasets_hmc/dynamic_data/destination/lazio
- /continuum/datasets_hmc/dynamic_data/restart/liri
- /continuum/datasets_hmc/dynamic_data/source/liri
- /continuum/datasets_hmc/dynamic_data/destination/liri
- /continuum/datasets_hmc/dynamic_data/restart/po
- /continuum/datasets_hmc/dynamic_data/source/po
- /continuum/datasets_hmc/dynamic_data/destination/po
- /continuum/datasets_hmc/dynamic_data/restart/puglia
- /continuum/datasets_hmc/dynamic_data/source/puglia
- /continuum/datasets_hmc/dynamic_data/destination/puglia
- /continuum/datasets_hmc/dynamic_data/restart/romagna
- /continuum/datasets_hmc/dynamic_data/source/romagna
- /continuum/datasets_hmc/dynamic_data/destination/romagna
- /continuum/datasets_hmc/dynamic_data/restart/sardegna
- /continuum/datasets_hmc/dynamic_data/source/sardegna
- /continuum/datasets_hmc/dynamic_data/destination/sardegna
- /continuum/datasets_hmc/dynamic_data/restart/sicilia
- /continuum/datasets_hmc/dynamic_data/source/sicilia
- /continuum/datasets_hmc/dynamic_data/destination/sicilia
- /continuum/datasets_hmc/dynamic_data/restart/tevere
- /continuum/datasets_hmc/dynamic_data/source/tevere
- /continuum/datasets_hmc/dynamic_data/destination/tevere
- /continuum/datasets_hmc/dynamic_data/restart/toscana
- /continuum/datasets_hmc/dynamic_data/source/toscana
- /continuum/datasets_hmc/dynamic_data/destination/toscana
- /continuum/datasets_hmc/dynamic_data/restart/volturno
- /continuum/datasets_hmc/dynamic_data/source/volturno
- /continuum/datasets_hmc/dynamic_data/destination/volturno
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Transfer HPC job results to the cloud staging area
HPCToCloudWRFJob:
type: org.lexis.common.ddi.nodes.HPCToCloudJob
properties:
token: { get_input: token }
task_name: { get_input: computation_heappe_command_template_name }
source_subdirectory: "results"
cloud_staging_area_directory_path: "continuum_wrf_results"
timestamp_cloud_staging_area_directory: true
requirements:
- sameSite:
type_requirement: os
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.ddi.relationships.SameSite
- job:
type_requirement: job
node: WRF
capability: org.lexis.common.heappe.capabilities.HeappeJob
relationship: org.lexis.common.ddi.relationships.SendJobOutputs
MountWRFDataset:
type: org.lexis.common.ddi.nodes.SSHFSMountStagingAreaDataset
properties:
token: { get_input: token }
mount_point_directory: "/mnt/cloud_staging_area/wrf_results"
requirements:
- ddi_access:
type_requirement: ddi_access
node: GetDDIAccess
capability: org.lexis.common.ddi.capabilities.DDIAccess
relationship: org.lexis.common.ddi.relationships.DDIAccessProvider
- data_transfer:
type_requirement: data_transfer
node: HPCToCloudWRFJob
capability: org.lexis.common.ddi.capabilities.DataTransferCloud
relationship: org.lexis.common.ddi.relationships.CloudAreaDatasetProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Move only the WRF auxhist results needed by post-processing
MoveWRFAuxhistResults:
type: org.lexis.common.datatransfer.nodes.MoveFile
properties:
source_file: "/mnt/cloud_staging_area/wrf_results/*/aux/*/auxhist*"
destination: "/continuum/datasets_hyde/dynamic_data/"
as_user: "root"
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Move the WRF lexis result to be uploaded to dewetra
MoveWRFLexisResult:
type: org.lexis.common.datatransfer.nodes.MoveFile
properties:
source_file: "/mnt/cloud_staging_area/wrf_results/*/dewetra/lexis*"
destination: "/continuum/datasets_hyde/dynamic_data/"
as_user: "root"
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Transfer HEAppE WRF job results to DDI
HPCToDDIJob:
type: org.lexis.common.ddi.nodes.HPCToDDIJob
metadata:
task: preprocessing
properties:
token: { get_input: token }
metadata: {concat: ["{\"creator\": [\"Continuum workflow\"], \"contributor\": [\"Continuum workflow\"], \"publisher\": [\"Continuum workflow\"], \"resourceType\": \"Dataset\", \"title\": \"Continuum Workflow WRF result - ", get_input: postprocessing_run_date, "\"}"]}
encrypt: {get_input: postprocessing_encrypt_dataset_result}
compress: {get_input: postprocessing_compress_dataset_result}
ddi_path: { get_input: postprocessing_ddi_project_path }
task_name: { get_input: computation_heappe_command_template_name }
source_subdirectory: "results"
requirements:
- job:
type_requirement: job
node: WRF
capability: org.lexis.common.heappe.capabilities.HeappeJob
relationship: org.lexis.common.ddi.relationships.SendJobOutputs
DDIToCloudContinuumStaticDataJob:
type: org.lexis.common.ddi.nodes.DDIToCloudJob
properties:
token: { get_input: token }
ddi_dataset_path: { get_input: postprocessing_dataset_continuum_static_data_path }
cloud_staging_area_directory_path: "continuum_postprocessing_hyde"
timestamp_cloud_staging_area_directory: true
requirements:
- sameSite:
type_requirement: os
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.ddi.relationships.SameSite
MountContinuumDataset:
type: org.lexis.common.ddi.nodes.SSHFSMountStagingAreaDataset
properties:
token: { get_input: token }
mount_point_directory: "/mnt/cloud_staging_area/postprocess_hyde"
requirements:
- ddi_access:
type_requirement: ddi_access
node: GetDDIAccess
capability: org.lexis.common.ddi.capabilities.DDIAccess
relationship: org.lexis.common.ddi.relationships.DDIAccessProvider
- data_transfer:
type_requirement: data_transfer
node: DDIToCloudContinuumStaticDataJob
capability: org.lexis.common.ddi.capabilities.DataTransferCloud
relationship: org.lexis.common.ddi.relationships.CloudAreaDatasetProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
FindContinuumStaticDataFiles:
type: org.lexis.common.datatransfer.nodes.FindFilesInStagingAreaDirectory
properties:
shell_patterns:
- gridded
- point
requirements:
- cloud_area_directory_provider:
type_requirement: cloud_area_directory_provider
node: MountContinuumDataset
capability: org.lexis.common.ddi.capabilities.CloudAreaDirectoryProvider
relationship: org.lexis.common.ddi.relationships.CloudAreaDirectoryProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
MoveContinuumStaticDataFiles:
type: org.lexis.common.datatransfer.nodes.MoveFilesFromProvider
properties:
destination_directory: "/continuum/datasets_hyde/static_data"
requirements:
- files_provider:
type_requirement: files_provider
node: FindContinuumStaticDataFiles
capability: org.lexis.common.datatransfer.capabilities.FilesProvider
relationship: org.lexis.common.datatransfer.relationships.FilesProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
DDIToCloudContinuumHMCInitialConditionsDataJob:
type: org.lexis.common.ddi.nodes.DDIToCloudJob
properties:
token: { get_input: token }
ddi_dataset_path: { get_input: postprocessing_dataset_continuum_hmc_initial_conditions_data_path }
cloud_staging_area_directory_path: "continuum_postprocessing_hmc"
timestamp_cloud_staging_area_directory: true
requirements:
- sameSite:
type_requirement: os
node: ContinuumVM
capability: tosca.capabilities.OperatingSystem
relationship: org.lexis.common.ddi.relationships.SameSite
MountContinuumHMCInitialConditionsDataset:
type: org.lexis.common.ddi.nodes.SSHFSMountStagingAreaDataset
properties:
token: { get_input: token }
mount_point_directory: "/mnt/cloud_staging_area/postprocess_hmc"
requirements:
- ddi_access:
type_requirement: ddi_access
node: GetDDIAccess
capability: org.lexis.common.ddi.capabilities.DDIAccess
relationship: org.lexis.common.ddi.relationships.DDIAccessProvider
- data_transfer:
type_requirement: data_transfer
node: DDIToCloudContinuumHMCInitialConditionsDataJob
capability: org.lexis.common.ddi.capabilities.DataTransferCloud
relationship: org.lexis.common.ddi.relationships.CloudAreaDatasetProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
FindContinuumHMCInitialConditionsFiles:
type: org.lexis.common.datatransfer.nodes.FindFilesInStagingAreaDirectory
properties:
shell_patterns:
- marche
- liguria
- adige
- basilicata
- calabria
- fvg
- gargano
- lazio
- liri
- po
- puglia
- romagna
- sardegna
- sicilia
- tevere
- toscana
- volturno
requirements:
- cloud_area_directory_provider:
type_requirement: cloud_area_directory_provider
node: MountContinuumHMCInitialConditionsDataset
capability: org.lexis.common.ddi.capabilities.CloudAreaDirectoryProvider
relationship: org.lexis.common.ddi.relationships.CloudAreaDirectoryProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
MoveContinuumHMCInitialConditionsFiles:
type: org.lexis.common.datatransfer.nodes.MoveFilesFromProvider
properties:
destination_directory: "/continuum/datasets_hmc/dynamic_data/restart"
requirements:
- files_provider:
type_requirement: files_provider
node: FindContinuumHMCInitialConditionsFiles
capability: org.lexis.common.datatransfer.capabilities.FilesProvider
relationship: org.lexis.common.datatransfer.relationships.FilesProvider
- hostedOnComputeHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
# Move results to match Continuum inputs structure expectations
MoveObservationContinuumData:
type: org.lexis.common.datatransfer.nodes.MoveFile
properties:
source_file: "/wps_data/observations/*/SENSORS/*"
destination: "/continuum/datasets_hyde/dynamic_data"
as_user: "root"
requirements:
- hostedOnVirtualMachineHost:
type_requirement: host
node: ContinuumVM
capability: tosca.capabilities.Container
relationship: tosca.relationships.HostedOn
Continuum_Hyde_marche:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/marche:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/marche:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"marche\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_liguria:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/liguria:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/liguria:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"liguria\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_adige:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/adige:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/adige:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"adige\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_basilicata:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/basilicata:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/basilicata:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"basilicata\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_calabria:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/calabria:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/calabria:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"calabria\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_fvg:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/fvg:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/fvg:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"fvg\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_gargano:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/gargano:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/gargano:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"gargano\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_lazio:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/lazio:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/lazio:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"lazio\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_liri:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing
properties:
auto_remove: false
cleanup: false
detach: false
image: {get_input: postprocessing_hyde_image}
keep_volumes: true
restart_policy: no
cpu_share: 1.0
workdir: "/home/fp/fp_entrypoint/"
volumes:
- "/continuum/datasets_hyde/static_data/gridded/liri:/home/fp/fp_mount/datasets_hyde/static"
- "/continuum/datasets_hyde/dynamic_data/:/home/fp/fp_mount/datasets_hyde/dynamic_raw"
- "/continuum/datasets_hyde/docker_data/liri:/home/fp/fp_mount/datasets_hyde/dynamic_processed"
docker_env_vars: {concat: ["{\"RUN_TIME_NOW\": \"", get_input: postprocessing_run_date, "\",\"APP_MAIN\":\"fp_docker_entrypoint_app_main_hyde.py\",\"APP_CONFIG\":\"fp_docker_entrypoint_app_configuration_hyde.json\",\"TARGET_DATA_STATIC\": \"/home/fp/fp_mount/datasets_hyde/static/\",\"TARGET_DATA_DYNAMIC_RAW\": \"/home/fp/fp_mount/datasets_hyde/dynamic_raw/\",\"TARGET_DATA_DYNAMIC_PROCESSED\": \"/home/fp/fp_mount/datasets_hyde/dynamic_processed/\",\"RUN_TIME_STEPS_OBS\": \"36\",\"RUN_TIME_STEPS_FOR\": \"48\",\"RUN_NAME\": \"fp_hyde_run\",\"RUN_DOMAIN\": \"liri\",\"RUN_ENS\": \"false\"}"]}
requirements:
- hostedOnContainerRuntimeDockerHost:
type_requirement: host
node: Docker
capability: org.alien4cloud.extended.container.capabilities.ApplicationHost
relationship: org.alien4cloud.extended.container.relationships.HostedOnContainerRuntime
Continuum_Hyde_po:
type: org.ystia.docker.containers.docker.generic.nodes.GenericContainer
metadata:
task: postprocessing