fix: #140

Author: lgrcia

docs/ipynb/casestudies/transit.ipynb

@@ -194,7 +194,7 @@
             "source": [
                 "from prose import Fluxes\n",
                 "\n",
-                "fluxes: Fluxes = photometry[-1].fluxes\n"
+                "fluxes: Fluxes = photometry[-1].fluxes"
             ]
         },
         {
@@ -255,17 +255,17 @@
                 "fluxes.target = 6\n",
                 "\n",
                 "# a bit of cleaning\n",
-                "nan_stars = np.any(np.isnan(fluxes.fluxes), axis=(0, 2)) # stars with nan fluxes\n",
-                "fluxes = fluxes.mask_stars(~nan_stars) # mask nans stars\n",
-                "fluxes = fluxes.sigma_clipping_data(bkg=3, fwhm=3) # sigma clipping\n",
+                "nan_stars = np.any(np.isnan(fluxes.fluxes), axis=(0, 2))  # stars with nan fluxes\n",
+                "fluxes = fluxes.mask_stars(~nan_stars)  # mask nans stars\n",
+                "fluxes = fluxes.sigma_clipping_data(bkg=3, fwhm=3)  # sigma clipping\n",
                 "\n",
                 "# differential photometry\n",
                 "diff = fluxes.autodiff()\n",
                 "\n",
                 "# plotting\n",
                 "ax = plt.subplot(xlabel=\"time (JD)\", ylabel=\"diff. flux\", ylim=(0.94, 1.06))\n",
                 "diff.plot()\n",
-                "diff.bin(5 / 60 / 24, estimate_error=True).errorbar()\n"
+                "diff.bin(5 / 60 / 24, estimate_error=True).errorbar()"
             ]
         },
         {
@@ -542,7 +542,7 @@
                 "    y = diff.df[name].copy()\n",
                 "    y = (y - np.mean(y)) / np.std(y) + 8 * i\n",
                 "    plt.text(diff.time.max(), np.mean(y) + 4, name, ha=\"right\")\n",
-                "    plt.plot(diff.time, y, \".\", c=\"0.8\" if name != \"flux\" else \"k\")\n"
+                "    plt.plot(diff.time, y, \".\", c=\"0.8\" if name != \"flux\" else \"k\")"
             ]
         },
         {
@@ -604,7 +604,7 @@
                 "    ],\n",
                 ")\n",
                 "\n",
-                "faster_photometry.run(sciences)\n"
+                "faster_photometry.run(sciences)"
             ]
         },
         {
@@ -616,10 +616,18 @@
             ]
         },
         {
-            "attachments": {},
             "cell_type": "markdown",
             "metadata": {},
-            "source": []
+            "source": [
+                "\n",
+                "```{note}\n",
+                "[SequenceParallel](prose.core.sequence.SequenceParallel) class is a subclass of [Sequence](prose.core.sequence.Sequence). For example, the `fluxes` after this sequence is ran can be accessed with\n",
+                "\n",
+                "```python\n",
+                "fluxes = faster_photometry.data[-1].fluxes\n",
+                "```\n",
+                "```"
+            ]
         }
     ],
     "metadata": {