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NAMESPACE
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69 lines (68 loc) · 2.28 KB
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# Generated by roxygen2: do not edit by hand
export(aggregateAcrossCells.se)
export(aggregateAcrossGenes.se)
export(aggregateColData)
export(analyze.se)
export(chooseRnaHvgs.se)
export(clusterGraph.se)
export(clusterKmeans.se)
export(computeRnaQcMetricsWithAltExps)
export(correctMnn.se)
export(formatComputeAdtQcMetricsResult)
export(formatComputeCrisprQcMetricsResult)
export(formatComputeRnaQcMetricsResult)
export(formatModelGeneVariancesResult)
export(formatScoreMarkersResult)
export(getTestAdtData.se)
export(getTestCrisprData.se)
export(getTestRnaData.se)
export(normalizeAdtCounts.se)
export(normalizeCrisprCounts.se)
export(normalizeRnaCounts.se)
export(previewMarkers)
export(quickAdtQc.se)
export(quickCrisprQc.se)
export(quickRnaQc.se)
export(runAllNeighborSteps.se)
export(runPca.se)
export(runTsne.se)
export(runUmap.se)
export(scaleByNeighbors.se)
export(scoreGeneSet.se)
export(scoreMarkers.se)
importClassesFrom(DelayedArray,DelayedArray)
importClassesFrom(IRanges,DataFrameList)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(S4Vectors,List)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(BiocNeighbors,AnnoyParam)
importFrom(DelayedArray,DelayedArray)
importFrom(Matrix,colSums)
importFrom(Matrix,t)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"altExp<-")
importFrom(SingleCellExperiment,"mainExpName<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,altExp)
importFrom(SingleCellExperiment,altExpNames)
importFrom(SingleCellExperiment,mainExpName)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"metadata<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(methods,as)
importFrom(methods,is)
importFrom(utils,head)