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2701 lines (2473 loc) · 183 KB
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# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand.
[[package]]
name = "annotated-types"
version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
groups = ["main"]
files = [
{file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
{file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
description = "ANTLR 4.9.3 runtime for Python 3.7"
optional = false
python-versions = "*"
groups = ["main"]
files = [
{file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
]
[[package]]
name = "arrow"
version = "1.3.0"
description = "Better dates & times for Python"
optional = false
python-versions = ">=3.8"
groups = ["main"]
files = [
{file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
{file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
]
[package.dependencies]
python-dateutil = ">=2.7.0"
types-python-dateutil = ">=2.8.10"
[package.extras]
doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
[[package]]
name = "attrs"
version = "25.3.0"
description = "Classes Without Boilerplate"
optional = false
python-versions = ">=3.8"
groups = ["main"]
files = [
{file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"},
{file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"},
]
[package.extras]
benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"]
tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""]
[[package]]
name = "beautifulsoup4"
version = "4.13.4"
description = "Screen-scraping library"
optional = false
python-versions = ">=3.7.0"
groups = ["main"]
files = [
{file = "beautifulsoup4-4.13.4-py3-none-any.whl", hash = "sha256:9bbbb14bfde9d79f38b8cd5f8c7c85f4b8f2523190ebed90e950a8dea4cb1c4b"},
{file = "beautifulsoup4-4.13.4.tar.gz", hash = "sha256:dbb3c4e1ceae6aefebdaf2423247260cd062430a410e38c66f2baa50a8437195"},
]
[package.dependencies]
soupsieve = ">1.2"
typing-extensions = ">=4.0.0"
[package.extras]
cchardet = ["cchardet"]
chardet = ["chardet"]
charset-normalizer = ["charset-normalizer"]
html5lib = ["html5lib"]
lxml = ["lxml"]
[[package]]
name = "bioregistry"
version = "0.12.13"
description = "Integrated registry of biological databases and nomenclatures"
optional = false
python-versions = ">=3.9"
groups = ["main"]
files = [
{file = "bioregistry-0.12.13-py3-none-any.whl", hash = "sha256:d2a9d3d7bf40aecd2f5f54cbe61cea222d1192b6315058ebceea22ff1c2365dd"},
{file = "bioregistry-0.12.13.tar.gz", hash = "sha256:1e5d462cede81c27e121081aaac467a6f3839135a2841ec2581e1c906b63a9e7"},
]
[package.dependencies]
click = "*"
curies = ">=0.7.0"
more_click = ">=0.1.2"
pydantic = {version = ">=2.0", extras = ["email"]}
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib_venn", "pandas", "seaborn"]
docs = ["autodoc_pydantic", "sphinx (>=8)", "sphinx-click", "sphinx-rtd-theme (>=3.0)", "sphinx_automodapi"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more_itertools"]
health = ["click_default_group", "jinja2", "pandas", "pyyaml", "tabulate"]
mapping-checking = ["pandas", "sentence_transformers"]
paper-ranking = ["indra", "pandas", "scikit-learn", "tabulate"]
tests = ["coverage", "httpx", "indra", "more_itertools", "pytest", "scikit-learn"]
web = ["a2wsgi", "bootstrap-flask", "curies[fastapi]", "fastapi", "flask (>=3.0.0)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint (>=0.5.3)", "rdflib-jsonld", "uvicorn", "werkzeug (>=3.0.0)"]
[[package]]
name = "cachetools"
version = "5.5.2"
description = "Extensible memoizing collections and decorators"
optional = false
python-versions = ">=3.7"
groups = ["main"]
files = [
{file = "cachetools-5.5.2-py3-none-any.whl", hash = "sha256:d26a22bcc62eb95c3beabd9f1ee5e820d3d2704fe2967cbe350e20c8ffcd3f0a"},
{file = "cachetools-5.5.2.tar.gz", hash = "sha256:1a661caa9175d26759571b2e19580f9d6393969e5dfca11fdb1f947a23e640d4"},
]
[[package]]
name = "certifi"
version = "2025.4.26"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
groups = ["main"]
files = [
{file = "certifi-2025.4.26-py3-none-any.whl", hash = "sha256:30350364dfe371162649852c63336a15c70c6510c2ad5015b21c2345311805f3"},
{file = "certifi-2025.4.26.tar.gz", hash = "sha256:0a816057ea3cdefcef70270d2c515e4506bbc954f417fa5ade2021213bb8f0c6"},
]
[[package]]
name = "cfgraph"
version = "0.2.1"
description = "rdflib collections flattening graph"
optional = false
python-versions = "*"
groups = ["main"]
files = [
{file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
]
[package.dependencies]
rdflib = ">=0.4.2"
[[package]]
name = "chardet"
version = "5.2.0"
description = "Universal encoding detector for Python 3"
optional = false
python-versions = ">=3.7"
groups = ["main"]
files = [
{file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
{file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
]
[[package]]
name = "charset-normalizer"
version = "3.4.1"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
optional = false
python-versions = ">=3.7"
groups = ["main"]
files = [
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