geiprs/DESCRIPTION at main · linnabrown/geiprs · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
Package: geiprs
Title: GEIPRS: Efficient Lasso Solver for Large SNP and Genotype-Environment data
Version: 0.1.0
Type: Package
Authors@R: c(
    person("Le", "Huang", email = "lena.huang@gehealthcare.com", role = c("aut", "cre")),
    person("Wujuan", "Zhong", role = c("aut")),
    person("Song", "Zhai", role = c("aut")),
    person("Judong", "Shen", role = c("ctb"))
    )
Description: Fitting the entire (sparse) group lasso solution path on large-scale genotype-phenotype data.
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.1)
Imports:
    dplyr,
    data.table,
    ROCR,
    utils,
    stringr,
    tibble,
    tidyr,
    stats,
    cindex,
    pgenlibr,
    glmnet,
    magrittr,
    gglasso,
    sparsegl,
    dotCall64,
    methods,
    Matrix,
    Rcpp
LinkingTo: Rcpp
Remotes:
    junyangq/glmnetPlus,
    chrchang/plink-ng/2.0/cindex,
    chrchang/plink-ng/2.0/pgenlibr,
    dajmcdon/sparsegl
RoxygenNote: 7.2.3
Suggests:
    knitr,
    rmarkdown,
    glmnetPlus,
    survival
VignetteBuilder: knitr