Skip to content

Questions on Utilizing COBRA for Megaphage and Plasmid Analysis #49

@ucaswhw

Description

@ucaswhw

Thank you very much for providing these tools. I have two questions I would like to consult with you. My research focuses on the ecological functions and evolution of bacteriophages.
1. Can the high-quality megaphage sequences recovered using COBRA be analyzed together with non-megaphage contigs (including processes like binning and functional annotation)? I am uncertain whether combining these extended high-quality viral contigs with other contigs for joint analysis might introduce systematic biases.
2. Is it possible to use COBRA to recover or extend plasmid fragments?

I would greatly appreciate it if you could provide answers to these questions. Thank you once again for your kind assistance!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions