Adjust test parameters and tolerances in test_accel.py #890
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| name: CI/CD | |
| permissions: | |
| contents: write | |
| on: | |
| # Run on pushes that modify this branch or tag the repo | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - v*.*.* | |
| # Run on pull requests that modify this branch/file | |
| pull_request: | |
| branches: | |
| - main | |
| # Let's also run the workflow on releases | |
| release: | |
| types: [published] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CI_PROJECT_DIR: ${{ github.workspace }} | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macOS-latest] # other options: windows-latest | |
| python-version: ["3.8", "3.12"] | |
| name: test SSAPy (${{ matrix.os }}) - python ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| lfs: true | |
| token: ${{ github.token }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies (Linux) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| # Install dependencies | |
| sudo apt-get update | |
| sudo apt-get install build-essential git git-lfs python3 python3-setuptools python3-venv graphviz cmake | |
| # Initialize and update submodules | |
| git submodule update --init --recursive | |
| # Install Git LFS and pull LFS objects | |
| git lfs install | |
| git lfs pull | |
| # Upgrade pip and install Python dependencies | |
| python -m pip install --upgrade pip setuptools flake8 | |
| python -m pip install -r requirements.txt | |
| # Build and install the project | |
| rm -rf build dist *.egg-info | |
| python3 -m build | |
| pip install dist/*.whl | |
| mv ssapy ssapy_src_backup | |
| # List installed Python packages | |
| python -m pip list | |
| - name: Install dependencies (MacOS) | |
| if: matrix.os == 'macOS-latest' | |
| run: | | |
| # Update Homebrew; only install missing formulae (avoid tap conflicts) | |
| brew update | |
| brew list --formula git >/dev/null 2>&1 || brew install git | |
| brew list --formula cmake >/dev/null 2>&1 || brew install cmake | |
| brew list --formula git-lfs >/dev/null 2>&1 || brew install git-lfs | |
| # Make LFS usable in this headless environment | |
| git lfs install --skip-repo | |
| git config --global credential.helper "" # avoid Keychain prompts | |
| # Use the actions/setup-python toolchain consistently | |
| python -m pip install --upgrade pip setuptools flake8 | |
| python -m pip install -r requirements.txt | |
| PYTHON_VERSION=$(python -c "import sys; print(f'cp{sys.version_info.major}{sys.version_info.minor}')") | |
| export ARCHFLAGS="-arch arm64" | |
| export CMAKE_OSX_ARCHITECTURES=arm64 | |
| export CIBW_BUILD="${PYTHON_VERSION}-macosx_*" | |
| echo "ARCHFLAGS=$ARCHFLAGS" | |
| echo "CMAKE_OSX_ARCHITECTURES=$CMAKE_OSX_ARCHITECTURES" | |
| echo "CIBW_BUILD=$CIBW_BUILD" | |
| python -m pip install --upgrade cibuildwheel delocate | |
| python -m cibuildwheel --platform macos | |
| # Check wheel deps | |
| find wheelhouse -name '*.whl' -exec delocate-listdeps {} \; | |
| # Install the generated wheel into the SAME interpreter | |
| python -m pip install wheelhouse/*.whl | |
| # Hide source tree so imports resolve to the wheel | |
| mv ssapy ssapy_src_backup | |
| python -m pip list | |
| - name: Debug build artifacts | |
| run: | | |
| find . -name "*_ssapy*.so" | |
| #- name: Install dependencies (Windows) | |
| # if: matrix.os == 'windows-latest' | |
| # run: | | |
| # python -m pip install --upgrade pip setuptools | |
| # python -m pip install -r requirements.txt | |
| # # install checked out SSAPy | |
| # python setup.py build | |
| # python setup.py install | |
| # python -m pip list | |
| #- name: Lint code | |
| # if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12 | |
| # run: | | |
| # python3 --version | |
| # flake8 --version | |
| # flake8 ssapy/ tests/ devel/ | |
| - name: Install pytest plugins | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| pip install pytest pytest-cov pytest-xdist | |
| - name: Test with pytest | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| # Run pytest with coverage, using all available CPUs and verbose output | |
| pytest -v -n auto --cov-report=xml --cov=ssapy --durations=20 | |
| - name: Upload coverage reports to Codecov | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # Only needed for private repos | |
| slug: LLNL/SSAPy # Correct slug: owner/repo | |
| files: coverage.xml # Optional if coverage.xml is in root | |
| flags: unittests # Optional, helps categorize | |
| name: codecov-ubuntu-py312 # Optional, helps identify the upload | |
| - name: Debug Python environment | |
| run: python -c "import ssapy; print('ssapy imported successfully')" | |
| - name: Build documentation | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12 | |
| run: | | |
| pip install -r docs/requirements.txt | |
| # python3 ${CI_PROJECT_DIR}/ssapy/update_benchmarks.py | |
| cd docs | |
| # Ensure necessary directories exist | |
| mkdir -p source/modules source/_templates | |
| rm -rf build | |
| sphinx-build -b html source build/html | |
| sphinx-autogen source/api.rst -t source/_templates -o source/modules | |
| # Build the HTML docs once | |
| make html | |
| # Add .nojekyll for GitHub Pages | |
| touch _build/html/.nojekyll | |
| cd .. | |
| - name: Deploy documentation | |
| if: (github.event_name == 'push' || github.event_name == 'schedule' || github.event_name == 'release') && matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12 | |
| uses: crazy-max/ghaction-github-pages@v4 | |
| with: | |
| target_branch: gh-pages | |
| build_dir: docs/_build/html | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| pass: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "All jobs passed" |