0.9.1 release prep (#1252)

* fix missing py bp table examples cmake dep

* relay silo, type fix for windows

* restore protection from blt fused lang mpi flags for blt smoke

* update changelog and release notes

Author: cyrush

CHANGELOG.md

@@ -4,18 +4,24 @@ Notable changes to Conduit are documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project aspires to adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## Unreleased
+## [0.9.1] - Released 2024-02-09
 
 ### Changed
 
 #### Conduit
 - Relaxed strict header check for C++14 back to C++11. A downstream consumer of Conduit has C++11 hardcoded into their build system and patching for related deployments is intractable.
+- Restore logic to avoid fused mpi c++ and fortran flags that can undermine blt's mpi smoke test.
 
 
 #### Blueprint
 - Fixed missing build dependency relationship with the python conduit blueprint table examples module.
 - Fixed partitioner so it does not duplicate faces when combining polyhedral meshes.
 
+### Added
+
+#### Relay
+- Added polygonal support to Blueprint Silo I/O.
+
 ## [0.9.0] - Released 2024-02-05
 
 ### Added
@@ -875,7 +881,8 @@ and this project aspires to adhere to [Semantic Versioning](https://semver.org/s
 ### Added
 - Initial Open Source Release on GitHub
 
-[Unreleased]: https://github.com/llnl/conduit/compare/v0.9.0...HEAD
+[Unreleased]: https://github.com/llnl/conduit/compare/v0.9.1...HEAD
+[0.9.1]: https://github.com/llnl/conduit/compare/v0.9.0...v0.9.1
 [0.9.0]: https://github.com/llnl/conduit/compare/v0.8.8...v0.9.0
 [0.8.8]: https://github.com/llnl/conduit/compare/v0.8.7...v0.8.8
 [0.8.7]: https://github.com/llnl/conduit/compare/v0.8.6...v0.8.7

setup.py

@@ -42,7 +42,7 @@
 from setuptools.command.build_ext import build_ext
 from distutils.version import LooseVersion
 
-CONDUIT_VERSION = '0.9.0'
+CONDUIT_VERSION = '0.9.1'
 
 class CMakeExtension(Extension):
     def __init__(self, name, sourcedir=''):

src/cmake/SetupBLT.cmake

@@ -57,6 +57,29 @@ if(ENABLE_MPI)
         # compiler will handle them implicitly
         set(conduit_blt_mpi_deps "" CACHE STRING "")
     endif()
+
+    # In some cases (mpich?) -fallow-argument-mismatch will be
+    # reported as a needed MPI flag for fortran.
+    # BLT fuses all MPI compiler flags into one big bunch.
+    # (It does not differentiate between C and fortran flags)
+    #
+    # -fallow-argument-mismatch is a fortran compiler flag that makes clang
+    # very unhappy, and this will cause blt's mpi smoke test to fail to build
+    # with clang.
+    #
+    # Conduit does not use mpi fortran, so we strip this flag if it exists.
+    #
+    # blt's mpi target is called "mpi"
+    if(TARGET mpi)
+    # check and strip interface compile opts
+        get_target_property(_mpi_iface_compile_opts mpi INTERFACE_COMPILE_OPTIONS)
+        if(_mpi_iface_compile_opts)
+            list(REMOVE_ITEM _mpi_iface_compile_opts "-fallow-argument-mismatch")
+            list(REMOVE_ITEM _mpi_iface_compile_opts "-fallow-invalid-boz")
+            set_target_properties(mpi PROPERTIES INTERFACE_COMPILE_OPTIONS "${_mpi_iface_compile_opts}")
+        endif()
+    endif()
+
 endif()
 
 if(ENABLE_OPENMP)

src/docs/sphinx/conf.py

@@ -70,9 +70,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '0.9.0'
+version = '0.9.1'
 # The full version, including alpha/beta/rc tags.
-release = '0.9.0'
+release = '0.9.1'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

src/docs/sphinx/releases.rst

@@ -12,9 +12,45 @@ https://github.com/LLNL/conduit/releases
 
 .. note:: Conduit uses `BLT <https://github.com/LLNL/blt>`__ as its core CMake build system. We leverage BLT as a git submodule, however github does not include submodule contents in its automatically created source tarballs. To avoid confusion, starting with v0.3.0 we provide our own source tarballs that include BLT. 
 
+v0.9.1
+---------------------------------
+
+* Released 2024-02-09
+* `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.9.1/conduit-v0.9.1-src-with-blt.tar.gz>`__
+
+Highlights
+++++++++++++++++++++++++++++++++++++
+
+(Extracted from Conduit's :download:`Changelog <../../../CHANGELOG.md>`)
+
+
+Changed
+~~~~~~~
+
+
+* **Conduit**
+
+ * Relaxed strict header check for C++14 back to C++11. A downstream consumer of Conduit has C++11 hardcoded into their build system and patching for related deployments is intractable.
+ * Restore logic to avoid fused mpi c++ and fortran flags that can undermine blt's mpi smoke test.
+
+* **Blueprint**
+
+ * Fixed missing build dependency relationship with the python conduit blueprint table examples module.
+ * Fixed partitioner so it does not duplicate faces when combining polyhedral meshes.
+
+Added
+~~~~~
+
+
+* **Relay**
+
+ * Added polygonal support to Blueprint Silo I/O.
+
+
 v0.9.0
 ---------------------------------
 
+* Released 2024-02-04
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.9.0/conduit-v0.9.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -105,6 +141,7 @@ Fixed
 v0.8.8
 ---------------------------------
 
+* Released 2023-05-18
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.8/conduit-v0.8.8-src-with-blt.tar.gz>`__
 
 Highlights
@@ -144,6 +181,7 @@ Fixed
 v0.8.7
 ---------------------------------
 
+* Released 2023-03-23
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.7/conduit-v0.8.7-src-with-blt.tar.gz>`__
 
 Highlights
@@ -205,6 +243,7 @@ Changed
 v0.8.6
 ---------------------------------
 
+* Released 2023-01-11
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.6/conduit-v0.8.6-src-with-blt.tar.gz>`__
 
 Highlights
@@ -239,6 +278,7 @@ Fixed
 v0.8.5
 ---------------------------------
 
+* Released 2022-12-22
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.5/conduit-v0.8.5-src-with-blt.tar.gz>`__
 
 Highlights
@@ -304,6 +344,7 @@ Fixed
 v0.8.4
 ---------------------------------
 
+* Released 2022-08-22
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.4/conduit-v0.8.4-src-with-blt.tar.gz>`__
 
 Highlights
@@ -374,6 +415,7 @@ Fixed
 v0.8.3
 ---------------------------------
 
+* Released 2022-04-14
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.3/conduit-v0.8.3-src-with-blt.tar.gz>`__
 
 Highlights
@@ -421,6 +463,7 @@ Changed
 v0.8.2
 ---------------------------------
 
+* Released 2022-02-01
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.2/conduit-v0.8.2-src-with-blt.tar.gz>`__
 
 Highlights
@@ -440,6 +483,7 @@ Fixed
 v0.8.1
 ---------------------------------
 
+* Released 2022-01-25
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.1/conduit-v0.8.1-src-with-blt.tar.gz>`__
 
 Highlights
@@ -481,6 +525,7 @@ Fixed
 v0.8.0
 ---------------------------------
 
+* Released 2021-12-20
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.8.0/conduit-v0.8.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -569,6 +614,7 @@ Fixed
 v0.7.2
 ---------------------------------
 
+* Released 2021-05-19
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.7.2/conduit-v0.7.2-src-with-blt.tar.gz>`__
 
 Highlights
@@ -629,6 +675,7 @@ Fixed
 v0.7.1
 ---------------------------------
 
+* Released 2021-02-11
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.7.1/conduit-v0.7.1-src-with-blt.tar.gz>`__
 
 Highlights
@@ -653,6 +700,7 @@ Fixed
 v0.7.0
 ---------------------------------
 
+* Released 2021-02-08
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.7.0/conduit-v0.7.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -728,6 +776,7 @@ Removed
 v0.6.0
 ---------------------------------
 
+* Released 2020-11-02
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.6.0/conduit-v0.6.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -827,6 +876,8 @@ Changed
 
 v0.5.1
 -----------------
+
+* Released 2020-01-18
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.5.1/conduit-v0.5.1-src-with-blt.tar.gz>`__
 
 Highlights
@@ -866,6 +917,8 @@ Fixed
 
 v0.5.0
 -----------------
+
+* Released 2019-10-25
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.5.0/conduit-v0.5.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -926,6 +979,8 @@ Fixed
 
 v0.4.0
 -----------------
+
+* Released 2019-03-01
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.4.0/conduit-v0.4.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -1013,6 +1068,7 @@ Fixed
 v0.3.1
 -----------------
 
+* Released 2018-02-26
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.3.1/conduit-v0.3.1-src-with-blt.tar.gz>`__
 
 
@@ -1045,6 +1101,7 @@ Highlights
 v0.3.0
 -----------------
 
+* Released 2017-08-21
 * `Source Tarball <https://github.com/LLNL/conduit/releases/download/v0.3.0/conduit-v0.3.0-src-with-blt.tar.gz>`__
 
 Highlights
@@ -1085,6 +1142,7 @@ Highlights
 v0.2.1
 -----------------
 
+* Released 2017-01-06
 * `Source Tarball <https://github.com/LLNL/conduit/archive/v0.2.1.tar.gz>`__
 
 
@@ -1113,6 +1171,7 @@ Highlights
 v0.2.0
 -----------------
 
+* Released 2016-11-03
 * `Source Tarball <https://github.com/LLNL/conduit/archive/v0.2.0.tar.gz>`__
 
 Highlights 
@@ -1142,5 +1201,11 @@ Highlights
  * Refactored the ``relay::WebServer`` and the Conduit Node Viewer application
  * Added entangle, a python script ssh tunneling solution
 
+v0.1.0
+-----------------
+
+* Released 2016-03-30
+* Initial Open Source Release on GitHub
+* `Source Tarball <https://github.com/LLNL/conduit/archive/v0.1.0.tar.gz>`__
 
 

src/libs/conduit/python/setup.py

@@ -25,7 +25,7 @@ def adjust_windows_args_paths():
 if platform.system() == 'Windows':
     adjust_windows_args_paths()
 
-CONDUIT_VERSION = '0.9.0'
+CONDUIT_VERSION = '0.9.1'
 
 setup (name = 'conduit',
        description = 'conduit',

src/libs/relay/conduit_relay_io_silo.cpp

@@ -312,7 +312,7 @@ class SiloTreePathGenerator
 std::string sanitize_silo_varname(const std::string &varname)
 {
     std::stringstream newvarname;
-    for (uint i = 0; i < varname.size(); i ++)
+    for (size_t i = 0; i < varname.size(); i ++)
     {
         if (std::isalnum(varname[i]))
             newvarname << varname[i];