Merge pull request #4 from thomvolker/main

first few changes to test data downloading

Author: thomvolker

.github/workflows/jekyll-gh-pages.yml

@@ -0,0 +1,51 @@
+# Sample workflow for building and deploying a Jekyll site to GitHub Pages
+name: Deploy Jekyll with GitHub Pages dependencies preinstalled
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["main"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Build job
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
+      - name: Build with Jekyll
+        uses: actions/jekyll-build-pages@v1
+        with:
+          source: ./
+          destination: ./_site
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+
+  # Deployment job
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.gitignore

@@ -2,3 +2,5 @@
 .Rhistory
 .RData
 .Ruserdata
+
+/.quarto/

TOPIC2/page1.qmd

@@ -1,15 +1,15 @@
 # Begin Project
 project:
   type: website
-  pre-render: wget -nc https://raw.githubusercontent.com/lmu-osc/branding-resources/refs/heads/main/lmu-osc-custom.scss
+  pre-render: wget -nc https://raw.githubusercontent.com/lmu-osc/branding-resources/refs/heads/main/lmu-osc-custom.scss --no-check-certificate
   post-render: rm lmu-osc-custom.scss
 # End Project
 
 
 # Begin Website
 website:
-  title: "TUTORIAL TITLE HERE"
-  page-footer: 
+  title: "Generating and evaluating synthetic data in R"
+  page-footer:
     center: "Copyright, 2024 Open Science Center at LMU Munich"
     border: false
   search:
@@ -21,10 +21,10 @@ website:
   favicon: assets/LMU_OSC_favicon.jpg
   margin-header: |
     ![](/assets/LMU_OSC_logo.svg){width="175"}
-  
-  
+
+
   navbar:
-    right: 
+    right:
       - about.qmd
     left:
       - href: index.qmd
@@ -38,37 +38,29 @@ website:
             url:  https://github.com/lmu-osc/REPO-NAME-HERE/issues
       - icon: house-heart
         url: https://www.osc.uni-muenchen.de/index.html
-   
-        
+
+
   sidebar:
     style: "docked"
     contents:
       - text: "Overview"
         href: index.qmd
-      - section: "TOPIC 1"
-        contents:
-          - href: TOPIC1/page1.qmd
-            text: "TOPIC1 Page1 Title"
-          - href: TOPIC1/page2.qmd
-            text: "TOPIC1 Page2 Title"
-      - section: "TOPIC 2"
-        contents:
-          - href: TOPIC2/page1.qmd
-            text: "TOPIC2 Page1 Title"
-          - href: TOPIC2/page2.qmd
-            text: "TOPIC2 Page2 Title"
-          - href: TOPIC2/page3.qmd
-            text: "TOPIC2 Page3 Title"
+      - text: "Statistical disclosure control"
+        href: sdc/
+      - text: "Generating synthetic data"
+        href: generation/
+      - text: "Evaluating synthetic data quality"
+        href: evaluation/
 # End Website
 
 
 # Begin Format
 format:
   html:
-    theme: 
+    theme:
       - cosmo
       - lmu-osc-custom.scss
-    css: 
+    css:
       - https://raw.githubusercontent.com/lmu-osc/branding-resources/refs/heads/main/lmu-osc-styles.css
     toc: true
     fontsize: 13pt

TOPIC2/page2.qmd

@@ -0,0 +1,20 @@
+
+set.seed(123)
+
+data <- mice::boys
+meth <- mice::make.method(data)
+meth["bmi"] <- "~I(wgt/(hgt/100)^2)"
+predmat <- mice::make.predictorMatrix(data)
+predmat[c("hgt", "wgt"), "bmi"] <- 0
+
+imp <- mice::mice(
+  data, 
+  method = meth, 
+  predictorMatrix = predmat,
+  maxit = 20, 
+  m = 1
+)
+
+data <- mice::complete(imp)
+
+saveRDS(data, "data/boys.RDS")

TOPIC2/page3.qmd

@@ -2,6 +2,7 @@
 title: "Page Title Here"
 ---
 
+
 The headers below cause the table of contents/dropdown on the right to be visible. 
 
 # Level One Header

_quarto.yml

@@ -20,4 +20,4 @@ The headers below cause the table of contents/dropdown on the right to be visibl
 
 # Level One Again
 
-## Level Two
+## Level Two