Add MLRK Time scheme , expand pAdaptation, and Fix LES bug in multiphase #693

Job	Run time
build (gfortran, RELEASE, PARALLEL, NO)	1h 3m 5s
build (ifort, RELEASE, PARALLEL, NO)	1h 30m 59s
build (gfortran, DEBUG, PARALLEL, NO)	9m 38s
build (ifort, DEBUG, PARALLEL, NO)	5h 32m 25s
	8h 16m 7s

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