CompatHelper: bump compat for Optim to 2, (keep existing compat) #472
lrnvAnnotations
10 errors
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/index.md:56-67
```@example
using Copulas, Distributions, Random, Plots
X₁ = Gamma(2,3)
X₂ = Beta(1,4)
X₃ = Normal()
C = ClaytonCopula(3,5.2) # A 3-variate Clayton Copula with θ = 0.7
D = SklarDist(C,(X₁,X₂,X₃)) # The final distribution
simu = rand(D,1000) # Generate a dataset
D̂ = fit(SklarDist{ClaytonCopula,Tuple{Gamma,Normal,Normal}}, simu) # estimate a model
plot(D̂) # plot the result
```
exception =
TypeError: in keyword argument autodiff, expected ADTypes.AbstractADType, got a value of type Symbol
Stacktrace:
[1] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle}; start::Symbol, xtol::Float64)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:242
[2] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:228
[3] macro expansion
@ ./timing.jl:461 [inlined]
[4] fit(::Type{CopulaModel}, CT::Type{ClaytonCopula}, U::Matrix{Float64}; method::Symbol, quick_fit::Bool, derived_measures::Bool, vcov::Bool, vcov_method::Nothing, kwargs::@kwargs{})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:200
[5] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:195 [inlined]
[6] fit(::Type{CopulaModel}, ::Type{SklarDist{ClaytonCopula, Tuple{Distributions.Gamma, Distributions.Normal, Distributions.Normal}}}, X::Matrix{Float64}; quick_fit::Bool, copula_method::Symbol, sklar_method::Symbol, margins_kwargs::@NamedTuple{}, copula_kwargs::@NamedTuple{}, derived_measures::Bool, vcov::Bool, vcov_method::Nothing)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:266
[7] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:242 [inlined]
[8] fit(T::Type{SklarDist{ClaytonCopula, Tuple{Distributions.Gamma, Distributions.Normal, Distributions.Normal}}}, U::Matrix{Float64})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:140
[9] top-level scope
@ index.md:65
[10] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[11] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[12] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[13] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[14] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[15] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[16] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[17] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[18] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:108-117
```@example 6
using StatsBase
Uhat = Copulas.pseudos(data)
S = reduce(hcat, (rosenblatt(fit_clayton.C, Uhat[:,i]) for i in 1:size(Uhat,1)))
ts = range(0.0, 1.0; length=400)
E1 = ecdf(S[1,:]); E2 = ecdf(S[2,:])
plot(ts, ts; label="Uniform", color=:blue)
plot!(ts, E1.(ts); seriestype=:steppost, label="s₁", color=:black)
plot!(ts, E2.(ts); seriestype=:steppost, label="s₂", color=:gray)
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] (::Main.__atexample__named__6.var"#5#6")(i::Int64)
@ Main.__atexample__named__6 ./none:-1
[2] MappingRF
@ ./reduce.jl:92 [inlined]
[3] _foldl_impl(op::Base.MappingRF{Main.__atexample__named__6.var"#5#6", Base.BottomRF{typeof(hcat)}}, init::Base._InitialValue, itr::UnitRange{Int64})
@ Base ./reduce.jl:50
[4] foldl_impl
@ ./reduce.jl:40 [inlined]
[5] mapfoldl_impl(f::typeof(identity), op::typeof(hcat), nt::Base._InitialValue, itr::Base.Generator{UnitRange{Int64}, Main.__atexample__named__6.var"#5#6"})
@ Base ./reduce.jl:36
[6] mapfoldl(f::Function, op::Function, itr::Base.Generator{UnitRange{Int64}, Main.__atexample__named__6.var"#5#6"}; init::Base._InitialValue)
@ Base ./reduce.jl:167
[7] mapfoldl
@ ./reduce.jl:167 [inlined]
[8] mapreduce
@ ./reduce.jl:299 [inlined]
[9] reduce(op::Function, itr::Base.Generator{UnitRange{Int64}, Main.__atexample__named__6.var"#5#6"})
@ Base ./reduce.jl:479
[10] top-level scope
@ lossalae.md:111
[11] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[12] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[13] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[14] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[15] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[16] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[17] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[18] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[19] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:91-104
```@example 6
using Copulas: MCopula
Cs = (
fit_gaussian.C,
fit_clayton.C,
fit_gumbel.C,
fit_frank.C,
MCopula(2),
)
labels = ("Gaussian", "Clayton", "Gumbel", "Frank", "M bound")
ps = [plot(C, :pdf; seriestype=:contourf, aspect_ratio=1, c=:viridis, title=labels[i])
for (i,C) in enumerate(Cs)]
plot(ps...; layout=(2,3), size=(950,600))
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ lossalae.md:93
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:78-81
```@example 6
u = rand(fit_clayton.C, 1500)
scatter(u[1,:],u[2,:])
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ lossalae.md:79
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:68-74
```@example 6
n = size(data,2)
plot(
scatter(sort(log.(loss)), log.(quantile.(Ref(fit_clayton.m[1]),(1:n)./(n+1))), label="Loss"),
scatter(sort(log.(alae)), log.(quantile.(Ref(fit_clayton.m[2]),(1:n)./(n+1))), label="Alae")
)
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ lossalae.md:70
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:49-51
```@example 6
fit_clayton
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[2] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[3] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[4] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[5] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[6] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[7] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[8] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[9] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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|
build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:57-59
```@example 6
nllhs = [-loglikelihood(fit,data) for fit in (fit_gaussian,fit_clayton,fit_gumbel,fit_frank)]
```
exception =
UndefVarError: `fit_clayton` not defined in `Main.__atexample__named__6`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ lossalae.md:58
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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|
build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/lossalae.md:48-54
```@example 6
fit_gaussian = fit(SklarDist{GaussianCopula,Tuple{LogNormal,LogNormal}}, data)
fit_clayton = fit(SklarDist{ClaytonCopula,Tuple{LogNormal,LogNormal}}, data)
fit_gumbel = fit(SklarDist{GumbelCopula,Tuple{LogNormal,LogNormal}}, data)
fit_frank = fit(SklarDist{FrankCopula,Tuple{LogNormal,LogNormal}}, data)
nothing # hide
```
exception =
TypeError: in keyword argument autodiff, expected ADTypes.AbstractADType, got a value of type Symbol
Stacktrace:
[1] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle}; start::Symbol, xtol::Float64)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:242
[2] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:228
[3] macro expansion
@ ./timing.jl:461 [inlined]
[4] fit(::Type{CopulaModel}, CT::Type{ClaytonCopula}, U::Matrix{Float64}; method::Symbol, quick_fit::Bool, derived_measures::Bool, vcov::Bool, vcov_method::Nothing, kwargs::@kwargs{})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:200
[5] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:195 [inlined]
[6] fit(::Type{CopulaModel}, ::Type{SklarDist{ClaytonCopula, Tuple{Distributions.LogNormal, Distributions.LogNormal}}}, X::Matrix{Float64}; quick_fit::Bool, copula_method::Symbol, sklar_method::Symbol, margins_kwargs::@NamedTuple{}, copula_kwargs::@NamedTuple{}, derived_measures::Bool, vcov::Bool, vcov_method::Nothing)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:266
[7] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:242 [inlined]
[8] fit(T::Type{SklarDist{ClaytonCopula, Tuple{Distributions.LogNormal, Distributions.LogNormal}}}, U::Matrix{Float64})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:140
[9] top-level scope
@ lossalae.md:50
[10] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[11] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[12] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[13] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[14] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[15] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[16] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[17] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[18] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/fitting_sklar.md:45-51
```@example 5
U = Copulas.pseudos(data) # pseudo-observations (uniforms)
Usim = rand(fitted_model.C, size(data,2)) # simulate same length from fitted copula
P1 = scatter(U[1,:], U[2,:]; ms=2, alpha=0.6, xlim=(0,1), ylim=(0,1), title="Empirical uniforms", legend=false)
P2 = scatter(Usim[1,:], Usim[2,:]; ms=2, alpha=0.6, xlim=(0,1), ylim=(0,1), title="Fitted copula uniforms", legend=false)
plot(P1, P2; layout=(1,2), size=(850,350))
```
exception =
UndefVarError: `fitted_model` not defined in `Main.__atexample__named__5`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ fitting_sklar.md:47
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/examples/fitting_sklar.md:20-25
```@example 5
MyCop = SurvivalCopula{4,ClaytonCopula,(2,4)}
MyMargs = Tuple{LogNormal,Pareto,Gamma,Normal}
MyD = SklarDist{MyCop, MyMargs}
fitted_model = fit(MyD,data)
```
exception =
TypeError: in keyword argument autodiff, expected ADTypes.AbstractADType, got a value of type Symbol
Stacktrace:
[1] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle}; start::Symbol, xtol::Float64)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:242
[2] _fit(CT::Type{ClaytonCopula}, U::Matrix{Float64}, ::Val{:mle})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/ArchimedeanCopula.jl:228
[3] _fit(::Type{SurvivalCopula{4, ClaytonCopula, (2, 4)}}, U::Matrix{Float64}, m::Val{:mle}; kwargs::@kwargs{})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/MiscellaneousCopulas/SurvivalCopula.jl:93
[4] _fit(::Type{SurvivalCopula{4, ClaytonCopula, (2, 4)}}, U::Matrix{Float64}, m::Val{:mle})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/MiscellaneousCopulas/SurvivalCopula.jl:88
[5] macro expansion
@ ./timing.jl:461 [inlined]
[6] fit(::Type{CopulaModel}, CT::Type{SurvivalCopula{4, ClaytonCopula, (2, 4)}}, U::Matrix{Float64}; method::Symbol, quick_fit::Bool, derived_measures::Bool, vcov::Bool, vcov_method::Nothing, kwargs::@kwargs{})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:200
[7] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:195 [inlined]
[8] fit(::Type{CopulaModel}, ::Type{SklarDist{SurvivalCopula{4, ClaytonCopula, (2, 4)}, Tuple{Distributions.LogNormal, Distributions.Pareto, Distributions.Gamma, Distributions.Normal}}}, X::Matrix{Float64}; quick_fit::Bool, copula_method::Symbol, sklar_method::Symbol, margins_kwargs::@NamedTuple{}, copula_kwargs::@NamedTuple{}, derived_measures::Bool, vcov::Bool, vcov_method::Nothing)
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:266
[9] fit
@ ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:242 [inlined]
[10] fit(T::Type{SklarDist{SurvivalCopula{4, ClaytonCopula, (2, 4)}, Tuple{Distributions.LogNormal, Distributions.Pareto, Distributions.Gamma, Distributions.Normal}}}, U::Matrix{Float64})
@ Copulas ~/work/Copulas.jl/Copulas.jl/src/Fitting.jl:140
[11] top-level scope
@ fitting_sklar.md:24
[12] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[13] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[14] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[15] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[16] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[17] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[18] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[19] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[20] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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