You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Copy file name to clipboardExpand all lines: rfc/5/versions/2/index.md
+15-15Lines changed: 15 additions & 15 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -27,7 +27,7 @@ This RFC is currently in RFC state `R4` (authors prepare responses).
27
27
|**Endorser**| Will Moore |@will-moore| University of Dundee | 2025-10-23 | Implemented |
28
28
|**Endorser**| David Stansby |@dstansby| University College London | 2025-10-23 | Implemented |
29
29
|**Endorser**| Norman Rzepka |@normanrz| Scalable Minds | 2024-08-22 ||
30
-
|**Reviewer**| Dan Toloudis, David Feng, Forrest Collman, Nathalie GAudreault, Gideon Dunster | toloudis, dyf, fcollman | Allen Institutes | 2024-11-28 |[Review](rfcs:rfc5:review1)|
30
+
|**Reviewer**| Dan Toloudis, David Feng, Forrest Collman, Nathalie Gaudreault, Gideon Dunster | toloudis, dyf, fcollman | Allen Institutes | 2024-11-28 |[Review](rfcs:rfc5:review1)|
31
31
|**Reviewer**| Will Moore, Jean-Marie Burel, Jason Swedlow | will-moore, jburel, jrswedlow | University of Dundee | 2025-01-22 |[Review](rfcs:rfc5:review2)|
32
32
33
33
## Overview
@@ -46,7 +46,7 @@ for neuro and bio-imaging and broader scientific imaging practices to enable:
46
46
transformations are applied consistently across different platforms and applications.
47
47
This FAIR capability is a cornerstone of scientific research,
48
48
and having standardized formats and tools facilitates verification of results by independent researchers.
49
-
2. Integration with Analysis Workflows:
49
+
2. Integration with Analysis Workflows:
50
50
Having spatial transformations as a first-class citizen within file formats
51
51
allows for seamless integration with various image analysis workflows.
52
52
Registration transformations can be used in subsequent image analysis steps
@@ -110,7 +110,7 @@ Coordinate Systems metadata example
110
110
The axes of a coordinate system (see below) give information
111
111
about the types, units, and other properties of the coordinate system's dimensions.
112
112
Axis names may contain semantically meaningful information, but can be arbitrary.
113
-
As a result, two coordinate systems that have identical axes in the same order
113
+
As a result, two coordinate systems that have identical axes in the same order
114
114
may not be "the same" in the sense that measurements at the same point
115
115
refer to different physical entities and therefore should not be analyzed jointly.
116
116
Tasks that require images, annotations, regions of interest, etc.,
@@ -207,7 +207,7 @@ Then `dim_0` has length 4, `dim_1` has length 3, and `dim_2` has length 5.
207
207
The axes and their order align with the shape of the corresponding zarr array,
208
208
and whose data depends on the byte order used to store chunks.
209
209
As described in the [Zarr array metadata](https://zarr.readthedocs.io/en/stable/spec/v3.html#arrays),
210
-
the last dimension of an array in "C" order are stored contiguously on disk or in-memory when directly loaded.
210
+
the last dimension of an array in "C" order are stored contiguously on disk or in-memory when directly loaded.
211
211
212
212
The name and axes names MAY be customized by including a `arrayCoordinateSystem` field
213
213
in the user-defined attributes of the array whose value is a coordinate system object.
@@ -267,7 +267,7 @@ The following transformations are supported:
267
267
|[`byDimension`](#bydimension)|`"transformations":List[Transformation]`, <br> `"input_axes": List[str]`, <br> `"output_axes": List[str]`| A high dimensional transformation using lower dimensional transformations on subsets of dimensions. |
268
268
269
269
Implementations SHOULD prefer to store transformations as a sequence of less expressive transformations where possible
270
-
(e.g., sequence[translation, rotation], instead of affine transformation with translation/rotation).
270
+
(e.g., sequence[translation, rotation], instead of affine transformation with translation/rotation).
271
271
272
272
````{admonition} Example
273
273
(example:coordinate_transformation_scale)=
@@ -278,7 +278,7 @@ Implementations SHOULD prefer to store transformations as a sequence of less exp
0 commit comments