asparagus/mkdocs.yml at main · lukasugar/asparagus · GitHub

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site_name: Asparagus
site_description: Medical imaging ML framework built on PyTorch, Lightning, and Hydra
repo_name: asparagus
repo_url: https://github.com/Sllambias/asparagus
site_url: https://Sllambias.github.io/asparagus/

theme:
  name: shadcn
  favicon: assets/imgs/favicon.ico
  icon: assets/imgs/android-chrome-512x512.png

markdown_extensions:
  - toc:
      permalink: false
  - pymdownx.tabbed:
      alternate_style: true
  - admonition
  - pymdownx.details

nav:
  - Home: index.md
  - Getting Started:
    - Installation:        getting-started/install.md
    - Environment Setup:   getting-started/environment_variables.md
    - HPC Configuration:   getting-started/environment_on_gefion.md
  - Data Pipeline:
    - Preprocessing:       data-pipeline/preprocessing.md
    - Data Structure:      data-pipeline/data_structure.md
  - Training Workflows:
    - Pretraining (SSL):   training-workflows/pretraining.md
    - Segmentation:        training-workflows/segmentation.md
    - Classification:      training-workflows/classification.md
    - Regression:          training-workflows/regression.md
    - Cross-Dataset Evaluation: training-workflows/cross_dataset.md
    - Config Reference:    training-workflows/configs.md
  - Evaluation:
    - The EvalBox:         evaluation/evalbox.md
  - Advanced:
    - Common Issues:       advanced/common_issues.md
    - Hacking Asparagus:   advanced/hacking_asparagus.md
    - Training Benchmarks: advanced/training_times.md
  - Project Info:
    - About Us:            project/about.md
    - Contributing:        project/contributing.md

extra_css:
  - assets/css/copy-code-button.css
extra_javascript:
  - assets/js/copy-code-button.js