Copy-paste demo scripts for funders, grant reviewers, and hospital decision-makers. Uses synthetic PatientOne data (PAT001-OVC-2025) -- 100% safe, no PHI.
Prerequisites: Claude Desktop with MCP servers configured (setup guide), OR deployed Streamlit UI, OR Jupyter notebook.
What data modalities need to be integrated for a comprehensive Stage IV
ovarian cancer precision medicine analysis?
Talking point: "Each modality traditionally requires separate tools and 8+ hours."
Using PatientOne data (PAT001-OVC-2025), identify the top 3 actionable
treatment targets based on spatial transcriptomics pathway enrichment.
Talking point: "Natural language, no coding. AI coordinates the servers automatically."
How long would this analysis take manually vs. with MCP servers?
Key result: 40 hours -> 2-5 hours (production); 25-35 min in DRY_RUN demo. See Value Proposition for full metrics.
Calculate the annual ROI for analyzing 100 ovarian cancer patients per year,
assuming $6,000 traditional cost per patient.
Key result: ~$313K modeled annual savings at 100 patients; payback in first 2-3 patients.
End-to-end demo using all platform capabilities. For clinical details see PatientOne Profile.
Using the mockepic server, summarize PAT001-OVC-2025's clinical history,
current medications, and treatment timeline.
Load PAT001-OVC-2025 genomic data and identify pathogenic variants
associated with ovarian cancer or treatment resistance.
Servers: mcp-mockepic, mcp-fgbio
Load PAT001-OVC-2025 multi-omics data (RNA, protein, phospho) and run
Stouffer meta-analysis to identify consistently dysregulated genes.
Perform pathway enrichment on the top 50 hits. Focus on druggable pathways.
Servers: mcp-multiomics, mcp-fgbio
Load PAT001-OVC-2025 Visium spatial data. Run spatial differential expression
comparing tumor vs stromal regions, then pathway enrichment on spatially
variable genes.
Servers: mcp-spatialtools
Uses all 19 servers including GEO, Open Targets, CIBERSORTx, neoantigen prediction. See Full E2E test prompt.
- Safety: Every AI result requires clinician APPROVE/REVISE/REJECT
- Status: Validated on synthetic data; clinical pilot is the next step
- Timeline: 6 months to hospital pilot (assumes GCP + Azure AD in place)
- Cost: $50K pilot (100 patients) or $75K/year production (500 patients)
- Open source: Apache 2.0, no vendor lock-in on the server layer
See also: Executive Summary | Value Proposition | PatientOne Profile