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MACS3 CI x64

Update cutoff_analysis_only return logic #763

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Update cutoff_analysis_only return logic

Update cutoff_analysis_only return logic #763

Run time

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Job Run time
Build on x64 with Python 3.12
12m 48s
Build on x64 with Python 3.13
13m 5s
Build on x64 with Python 3.14
13m 54s
39m 47s