refactor(monorepo): retarget runtime metadata to apps/api

Author: maehwasoo

.github/ISSUE_TEMPLATE/bug-report.md

@@ -14,8 +14,9 @@ Use the component checklist below and labels instead.
 
 Where is the issue happening?
 
-- [ ] Indexer (`packages/indexer`)
-- [ ] MCP server (`packages/mcp`)
+- [ ] Python backend/API (`apps/api`)
+- [ ] MCP service (`apps/api`)
+- [ ] Indexer CLI (`apps/api`)
 - [ ] Obsidian plugin (`packages/obsidian-plugin`)
 - [ ] Core/shared (`packages/core`)
 - [ ] Docs

.github/ISSUE_TEMPLATE/bug-report.yml

@@ -17,8 +17,9 @@ body:
       label: Component
       description: Where is the issue happening?
       options:
-        - Indexer (packages/indexer)
-        - MCP server (packages/mcp)
+        - Python backend/API (apps/api)
+        - MCP service (apps/api)
+        - Indexer CLI (apps/api)
         - Obsidian plugin (packages/obsidian-plugin)
         - Core/shared (packages/core)
         - Docs
@@ -31,7 +32,7 @@ body:
     attributes:
       label: What happened?
       description: What did you do, what happened, and what did you expect?
-      placeholder: "Indexer crashes with ... / MCP tool returns ..."
+      placeholder: "Python backend returns 503 with ... / MCP service startup fails with ..."
     validations:
       required: true
 
@@ -42,7 +43,7 @@ body:
       description: Minimal steps so we can reproduce
       placeholder: |
         1. Set OPENAI_EMBEDDING_MODEL=...
-        2. Run pnpm -C packages/indexer start -- ...
+        2. Run uv run --directory apps/api ailss-indexer --vault "$AILSS_VAULT_PATH"
         3. Observe ...
     validations:
       required: true

.github/ISSUE_TEMPLATE/refactor.yml

@@ -51,7 +51,7 @@ body:
     attributes:
       label: Validation
       description: Which checks/tests will confirm behavior is preserved?
-      placeholder: "- pnpm --filter @ailss/core test\n- pnpm --filter @ailss/mcp test"
+      placeholder: "- pnpm --filter @ailss/core test\n- pnpm py:test"
     validations:
       required: true
 

.github/ISSUE_TEMPLATE/test.md

@@ -13,8 +13,9 @@ Use labels for component tagging instead.
 
 Which area should be covered?
 
-- [ ] Indexer (`packages/indexer`)
-- [ ] MCP server (`packages/mcp`)
+- [ ] Python backend/API (`apps/api`)
+- [ ] MCP service (`apps/api`)
+- [ ] Indexer CLI (`apps/api`)
 - [ ] Obsidian plugin (`packages/obsidian-plugin`)
 - [ ] Core/shared (`packages/core`)
 - [ ] Docs

.github/ISSUE_TEMPLATE/test.yml

@@ -16,8 +16,9 @@ body:
       label: Component
       description: Which area should be covered?
       options:
-        - Indexer (packages/indexer)
-        - MCP server (packages/mcp)
+        - Python backend/API (apps/api)
+        - MCP service (apps/api)
+        - Indexer CLI (apps/api)
         - Obsidian plugin (packages/obsidian-plugin)
         - Core/shared (packages/core)
         - Docs

.github/labeler.yml

@@ -6,12 +6,21 @@ plugin:
 mcp:
   - changed-files:
       - any-glob-to-any-file:
-          - packages/mcp/**
+          - apps/api/src/ailss_api/mcp*.py
+          - apps/api/tests/test_mcp_runtime.py
+          - docs/reference/mcp-tools.md
+          - packages/obsidian-plugin/src/mcp/**
+          - packages/obsidian-plugin/src/settingsSections/mcpServiceSection.ts
+          - packages/obsidian-plugin/test/mcp/**
 
 indexer:
   - changed-files:
       - any-glob-to-any-file:
-          - packages/indexer/**
+          - apps/api/src/ailss_api/indexer*.py
+          - packages/obsidian-plugin/src/indexer/**
+          - packages/obsidian-plugin/src/settingsSections/indexMaintenanceSection.ts
+          - packages/obsidian-plugin/src/ui/indexDbResetFlow.ts
+          - packages/obsidian-plugin/src/ui/indexer*.ts
 
 core:
   - changed-files:

apps/api/README.md

@@ -1,12 +1,14 @@
 # AILSS API
 
-Local FastAPI app for the Python-first AILSS backend baseline.
+Python service app for the AILSS local runtime.
 
 ## Commands
 
 ```bash
-uv sync --directory apps/api
+uv sync --directory apps/api --locked
 uv run --directory apps/api ailss-api --host 127.0.0.1 --port 8000
+uv run --directory apps/api ailss-mcp-http
+uv run --directory apps/api ailss-indexer --help
 uv run --directory apps/api pytest
 ```
 

apps/api/pyproject.toml

@@ -1,7 +1,7 @@
 [project]
 name = "ailss-api"
 version = "0.1.0"
-description = "Python-first local agent backend baseline for AILSS"
+description = "Python service app for the AILSS local runtime"
 readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [

apps/api/src/ailss_api/main.py

@@ -37,7 +37,7 @@ def create_app(settings: Settings | None = None) -> FastAPI:
     app = FastAPI(
         title="AILSS API",
         version="0.1.0-dev",
-        summary="Python-first local agent backend baseline",
+        summary="Python-owned local service runtime",
     )
 
     @app.get("/health", response_model=HealthResponse)

packages/obsidian-plugin/src/settingsSections/advancedSection.ts

@@ -49,7 +49,7 @@ export function renderAdvancedSection(
 			});
 		});
 
-	advancedContainer.createEl("h4", { text: "MCP service (transition layer)" });
+	advancedContainer.createEl("h4", { text: "MCP service (localhost)" });
 
 	new Setting(advancedContainer)
 		.setName("Command")